Variant report

Variant	rs822779
Chromosome Location	chr3:22989455-22989456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1671868	0.97[EUR][1000 genomes]
rs1671884	0.89[EUR][1000 genomes]
rs1683043	0.82[EUR][1000 genomes]
rs1683074	0.97[EUR][1000 genomes]
rs1708146	0.89[EUR][1000 genomes]
rs3914284	0.88[EUR][1000 genomes]
rs4858467	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252313	0.91[EUR][1000 genomes]
rs696492	0.86[EUR][1000 genomes]
rs696501	0.88[EUR][1000 genomes]
rs696502	0.84[EUR][1000 genomes]
rs696503	0.86[EUR][1000 genomes]
rs696504	0.86[EUR][1000 genomes]
rs696508	0.91[EUR][1000 genomes]
rs696509	0.89[EUR][1000 genomes]
rs698224	0.88[EUR][1000 genomes]
rs698228	0.86[EUR][1000 genomes]
rs698232	0.87[EUR][1000 genomes]
rs711698	0.88[EUR][1000 genomes]
rs711699	0.86[EUR][1000 genomes]
rs711704	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs711707	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs711708	0.97[EUR][1000 genomes]
rs711709	0.97[EUR][1000 genomes]
rs711714	0.84[AMR][1000 genomes]
rs822754	0.91[EUR][1000 genomes]
rs822756	0.89[EUR][1000 genomes]
rs822757	0.88[EUR][1000 genomes]
rs822758	0.84[EUR][1000 genomes]
rs822781	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs822783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822784	0.92[EUR][1000 genomes]
rs822785	0.92[EUR][1000 genomes]
rs822786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822787	0.92[EUR][1000 genomes]
rs822788	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822789	0.92[EUR][1000 genomes]
rs822791	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs822779	RPL15	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22986600-22992600	Weak transcription	Fetal Lung	lung
2	chr3:22988600-22990200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:22988800-22990000	Enhancers	HSMMtube	muscle
4	chr3:22989000-22990200	Enhancers	Ovary	ovary
5	chr3:22989200-22989600	Enhancers	Fetal Muscle Leg	muscle
6	chr3:22989200-22989600	Enhancers	Fetal Stomach	stomach
7	chr3:22989200-22990000	Enhancers	Colon Smooth Muscle	Colon

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