Variant report

Variant	rs822789
Chromosome Location	chr3:22994602-22994603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22993477..22995035-chr3:22997792..23000607,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1671868	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1671884	0.81[EUR][1000 genomes]
rs1683074	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1708146	0.81[EUR][1000 genomes]
rs3914284	0.81[EUR][1000 genomes]
rs4858467	0.92[EUR][1000 genomes]
rs62252313	0.83[EUR][1000 genomes]
rs696501	0.81[EUR][1000 genomes]
rs696508	0.83[EUR][1000 genomes]
rs696509	0.81[EUR][1000 genomes]
rs697025	0.86[AMR][1000 genomes]
rs697026	0.86[AMR][1000 genomes]
rs698224	0.81[EUR][1000 genomes]
rs698232	0.81[EUR][1000 genomes]
rs698235	0.87[AMR][1000 genomes]
rs698239	0.86[AMR][1000 genomes]
rs711698	0.81[EUR][1000 genomes]
rs711704	0.89[EUR][1000 genomes]
rs711707	0.91[EUR][1000 genomes]
rs711708	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs711709	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs711713	0.87[AMR][1000 genomes]
rs822204	0.82[MEX][hapmap];0.86[AMR][1000 genomes]
rs822754	0.83[EUR][1000 genomes]
rs822756	0.81[EUR][1000 genomes]
rs822757	0.81[EUR][1000 genomes]
rs822758	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs822779	0.92[EUR][1000 genomes]
rs822781	0.92[EUR][1000 genomes]
rs822783	0.92[EUR][1000 genomes]
rs822784	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822785	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs822786	0.92[EUR][1000 genomes]
rs822787	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs822788	0.92[EUR][1000 genomes]
rs822791	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv998236	chr3:22979632-23011352	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs822789	RPL15	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22993400-23000800	Weak transcription	Fetal Lung	lung
2	chr3:22993800-22997200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:22994400-22994800	Enhancers	Fetal Heart	heart

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