Variant report

Variant	rs826803
Chromosome Location	chr7:147035547-147035548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10228191	0.90[JPT][hapmap]
rs10239550	0.90[JPT][hapmap]
rs10264424	0.90[JPT][hapmap]
rs10265626	0.90[JPT][hapmap]
rs1479841	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1479842	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1528532	0.94[JPT][hapmap]
rs1842275	0.90[JPT][hapmap]
rs2620472	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2620475	0.89[JPT][hapmap]
rs2692131	0.82[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs2692132	0.95[CHB][hapmap]
rs2692133	0.89[CHB][hapmap]
rs2697453	0.90[JPT][hapmap]
rs28546178	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs700298	0.87[JPT][hapmap]
rs700299	0.89[JPT][hapmap]
rs700300	0.90[JPT][hapmap]
rs700301	0.90[JPT][hapmap]
rs700306	0.90[JPT][hapmap]
rs826641	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs826642	0.90[JPT][hapmap]
rs826647	0.90[JPT][hapmap]
rs826649	0.88[JPT][hapmap]
rs826650	0.90[JPT][hapmap]
rs826651	0.89[JPT][hapmap]
rs826652	0.90[JPT][hapmap]
rs826655	0.89[JPT][hapmap]
rs826788	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs826790	0.82[CEU][hapmap];0.94[CHB][hapmap]
rs826793	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826802	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826813	0.90[JPT][hapmap]
rs826814	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv526693	chr7:147011388-147054250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1018715	chr7:147012067-147052280	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv608953	chr7:147021553-147040881	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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