Variant report

Variant	rs826641
Chromosome Location	chr7:147144247-147144248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10228191	0.82[JPT][hapmap]
rs10239550	0.82[JPT][hapmap]
rs10264424	0.82[JPT][hapmap]
rs10265626	0.82[JPT][hapmap]
rs1304809	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13230403	0.86[JPT][hapmap]
rs1479841	1.00[JPT][hapmap]
rs1479842	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1585815	0.91[JPT][hapmap]
rs1842275	0.82[JPT][hapmap]
rs2620472	0.80[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap]
rs2620475	0.82[JPT][hapmap]
rs2692131	0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs2692132	0.81[JPT][hapmap]
rs2692133	0.86[JPT][hapmap];0.91[MEX][hapmap]
rs2697452	0.91[JPT][hapmap]
rs2697453	0.82[JPT][hapmap]
rs2697457	0.91[JPT][hapmap]
rs28546178	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs6464815	0.81[JPT][hapmap]
rs700293	0.91[JPT][hapmap]
rs700296	0.86[JPT][hapmap]
rs700299	0.82[JPT][hapmap]
rs700300	0.82[JPT][hapmap]
rs700301	0.82[JPT][hapmap]
rs700306	0.82[JPT][hapmap]
rs700311	0.91[JPT][hapmap]
rs7779225	0.82[ASW][hapmap]
rs7790550	0.82[ASW][hapmap]
rs826645	0.91[JPT][hapmap]
rs826647	0.82[JPT][hapmap]
rs826649	0.80[JPT][hapmap]
rs826650	0.82[JPT][hapmap]
rs826651	0.82[JPT][hapmap]
rs826652	0.82[JPT][hapmap]
rs826655	0.82[JPT][hapmap]
rs826656	0.91[JPT][hapmap]
rs826657	0.91[JPT][hapmap]
rs826658	0.91[JPT][hapmap]
rs826659	0.91[JPT][hapmap]
rs826660	0.91[JPT][hapmap]
rs826661	0.90[JPT][hapmap]
rs826786	0.90[JPT][hapmap]
rs826788	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs826790	0.85[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap]
rs826793	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs826802	0.80[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap]
rs826803	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs826812	0.91[JPT][hapmap]
rs826813	0.82[JPT][hapmap]
rs826814	0.82[JPT][hapmap]
rs826823	0.91[JPT][hapmap]
rs872713	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3394594	chr7:147144069-147146967	Active TSS	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs826641	LRRC61	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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