Variant report

Variant	rs2620475
Chromosome Location	chr7:147105368-147105369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147104454..147106953-chr7:147113755..147116042,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10228191	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10239550	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10264424	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10265626	1.00[JPT][hapmap]
rs12112534	0.98[ASN][1000 genomes]
rs1304809	0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs13230403	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs1479841	0.83[JPT][hapmap]
rs1479842	0.82[JPT][hapmap]
rs1479847	0.90[ASN][1000 genomes]
rs1525218	0.90[YRI][hapmap]
rs1528532	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs1585815	0.84[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1842275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2620438	0.90[ASN][1000 genomes]
rs2620472	0.82[JPT][hapmap]
rs2692131	0.82[JPT][hapmap]
rs2697452	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2697453	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2697457	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs28430910	0.80[EUR][1000 genomes]
rs28546178	0.91[JPT][hapmap]
rs4467862	0.82[YRI][hapmap]
rs6464797	0.89[YRI][hapmap]
rs6464815	0.81[JPT][hapmap]
rs6964021	0.90[YRI][hapmap]
rs700293	0.91[JPT][hapmap]
rs700296	0.86[JPT][hapmap]
rs700298	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs700299	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs700300	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs700301	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs700306	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs700308	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs700311	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs700312	0.96[ASN][1000 genomes]
rs700313	0.95[ASN][1000 genomes]
rs7778880	0.85[JPT][hapmap]
rs7779464	0.85[JPT][hapmap]
rs7780096	0.85[JPT][hapmap]
rs7788729	0.89[YRI][hapmap]
rs7788870	0.89[YRI][hapmap]
rs7788875	0.89[YRI][hapmap]
rs7803877	0.90[YRI][hapmap]
rs7805259	0.89[YRI][hapmap]
rs826641	0.82[JPT][hapmap]
rs826642	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs826645	0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826646	0.88[ASN][1000 genomes]
rs826647	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs826648	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs826649	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs826650	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs826651	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs826652	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs826655	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs826656	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs826657	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs826658	0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs826659	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs826660	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs826661	0.94[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs826662	0.96[ASN][1000 genomes]
rs826663	0.96[ASN][1000 genomes]
rs826664	0.96[ASN][1000 genomes]
rs826786	0.90[JPT][hapmap]
rs826788	0.84[JPT][hapmap]
rs826793	0.83[JPT][hapmap]
rs826802	0.91[JPT][hapmap]
rs826803	0.89[JPT][hapmap]
rs826812	0.89[CHB][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.95[ASN][1000 genomes]
rs826813	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[ASN][1000 genomes]
rs826814	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs826823	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs872713	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs899621	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097800-147107600	Weak transcription	NHDF-Ad	bronchial
3	chr7:147098800-147107800	Weak transcription	Osteobl	bone
4	chr7:147103800-147107600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:147104200-147107600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:147104200-147107800	Weak transcription	HSMMtube	muscle
7	chr7:147104200-147108000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:147104200-147108000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:147104200-147108000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:147104200-147108000	Weak transcription	HSMM	muscle

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