Variant report

Variant	rs13230403
Chromosome Location	chr7:147177998-147177999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1018991	0.88[CHD][hapmap]
rs10228191	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10236330	0.87[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs10239550	0.86[JPT][hapmap]
rs10264424	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10265626	0.81[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs10267232	0.94[CHD][hapmap]
rs1304809	0.95[JPT][hapmap]
rs1479841	0.86[JPT][hapmap]
rs1479842	0.86[JPT][hapmap]
rs1528532	1.00[YRI][hapmap]
rs1585815	0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap]
rs1585816	0.87[YRI][hapmap]
rs1819068	0.82[YRI][hapmap]
rs1842275	0.86[JPT][hapmap]
rs2620472	0.86[JPT][hapmap]
rs2620475	0.92[CEU][hapmap];0.86[JPT][hapmap]
rs2692131	0.86[JPT][hapmap]
rs2697452	0.96[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs2697453	0.96[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2697457	0.95[JPT][hapmap]
rs28430910	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6464815	0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs700293	0.95[JPT][hapmap]
rs700296	0.91[JPT][hapmap]
rs700298	0.82[JPT][hapmap]
rs700299	0.86[JPT][hapmap]
rs700300	0.86[JPT][hapmap]
rs700301	0.86[JPT][hapmap]
rs700306	0.86[JPT][hapmap]
rs700308	0.80[JPT][hapmap]
rs700311	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs7778880	0.87[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap]
rs7779464	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs7780096	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs826641	0.86[JPT][hapmap]
rs826642	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs826645	0.96[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs826647	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs826648	0.82[EUR][1000 genomes]
rs826649	0.95[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs826650	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs826651	0.85[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap]
rs826652	0.86[JPT][hapmap]
rs826655	0.85[JPT][hapmap]
rs826656	0.95[JPT][hapmap]
rs826657	0.95[JPT][hapmap]
rs826658	0.95[JPT][hapmap]
rs826659	0.95[JPT][hapmap]
rs826660	0.95[JPT][hapmap]
rs826661	0.95[JPT][hapmap]
rs826786	0.95[JPT][hapmap]
rs826788	0.84[JPT][hapmap]
rs826793	0.86[JPT][hapmap]
rs826812	0.95[JPT][hapmap]
rs826813	0.86[JPT][hapmap]
rs826814	0.86[JPT][hapmap]
rs826823	0.95[JPT][hapmap]
rs872713	0.96[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147176200-147180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:147177800-147178000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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