Variant report

Variant	rs7778880
Chromosome Location	chr7:147192488-147192489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147190883..147193448-chr7:147193743..147195946,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1018991	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs10228191	0.85[JPT][hapmap]
rs10236330	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs10239550	0.85[JPT][hapmap]
rs10264424	0.85[JPT][hapmap]
rs10265626	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10267232	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs10487689	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs13230403	0.87[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1585815	0.89[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs1842275	0.85[JPT][hapmap]
rs2620475	0.85[JPT][hapmap]
rs2697453	0.85[JPT][hapmap]
rs28430910	0.88[ASN][1000 genomes]
rs6464815	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6973129	1.00[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs700296	0.82[GIH][hapmap]
rs700298	0.82[JPT][hapmap]
rs700299	0.86[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs700300	0.85[JPT][hapmap]
rs700301	0.85[JPT][hapmap]
rs700306	0.85[JPT][hapmap]
rs700308	0.82[GIH][hapmap];0.81[TSI][hapmap]
rs7779464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs7780096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826642	0.80[JPT][hapmap]
rs826647	0.85[JPT][hapmap]
rs826649	0.89[JPT][hapmap]
rs826650	0.85[JPT][hapmap]
rs826651	0.85[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs826652	0.85[JPT][hapmap]
rs826655	0.86[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs826657	0.86[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs826660	0.89[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs826786	0.82[GIH][hapmap]
rs826813	0.85[JPT][hapmap]
rs826814	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7778880	OR6B1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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