Variant report

Variant	rs700308
Chromosome Location	chr7:147092615-147092616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1018991	0.82[GIH][hapmap];0.81[TSI][hapmap]
rs10228191	0.86[JPT][hapmap]
rs10239550	0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10264424	0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10265626	0.86[JPT][hapmap]
rs10267232	0.82[GIH][hapmap];0.81[TSI][hapmap]
rs12112534	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1304809	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs13230403	0.80[JPT][hapmap]
rs1479842	0.80[CHD][hapmap]
rs1479847	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1585815	0.91[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1842275	0.83[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs2620438	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2620472	0.82[CHD][hapmap]
rs2620475	0.83[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs2697452	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2697453	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2697457	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs6464815	0.89[GIH][hapmap]
rs700293	1.00[ASW][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap]
rs700296	1.00[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.80[JPT][hapmap];0.91[TSI][hapmap]
rs700298	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs700299	1.00[ASW][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs700300	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs700301	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs700306	0.94[CHB][hapmap];0.86[JPT][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700311	0.89[CHB][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs700312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs700313	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7778880	0.82[GIH][hapmap];0.81[TSI][hapmap]
rs826642	0.81[JPT][hapmap]
rs826645	0.91[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs826646	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826647	0.83[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs826648	0.88[ASN][1000 genomes]
rs826649	0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs826650	0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs826651	0.91[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826652	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs826655	1.00[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826656	0.89[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826657	1.00[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826658	0.89[CHB][hapmap];0.85[JPT][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs826659	0.89[CHB][hapmap];0.85[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826660	1.00[ASW][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.90[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826661	0.88[CHB][hapmap];0.84[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826662	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826663	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826786	1.00[ASW][hapmap];0.88[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.84[JPT][hapmap];0.94[TSI][hapmap]
rs826790	0.80[CHD][hapmap]
rs826802	0.84[CHD][hapmap]
rs826812	0.94[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs826813	0.89[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826814	0.89[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826823	0.89[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs872713	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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