Variant report

Variant	rs826645
Chromosome Location	chr7:147129593-147129594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10228191	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs10236330	0.86[JPT][hapmap]
rs10239550	0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10264424	0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10265626	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs12112534	0.87[ASN][1000 genomes]
rs1304809	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13230403	0.96[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1479841	0.91[JPT][hapmap]
rs1479842	0.91[JPT][hapmap]
rs1479847	0.95[ASN][1000 genomes]
rs1528532	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs1585815	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.98[ASN][1000 genomes]
rs1842275	0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2620438	0.95[ASN][1000 genomes]
rs2620472	0.91[JPT][hapmap]
rs2620475	0.96[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2692131	0.91[JPT][hapmap]
rs2697452	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2697453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2697457	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs28430910	0.80[EUR][1000 genomes]
rs28546178	0.81[JPT][hapmap]
rs6464815	0.90[JPT][hapmap]
rs700293	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs700296	0.88[CHD][hapmap];0.95[JPT][hapmap]
rs700298	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs700299	0.83[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap]
rs700300	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs700301	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs700306	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs700308	0.91[CHD][hapmap];0.85[JPT][hapmap]
rs700311	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs700312	0.89[ASN][1000 genomes]
rs700313	0.87[ASN][1000 genomes]
rs826641	0.91[JPT][hapmap]
rs826642	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs826646	0.97[ASN][1000 genomes]
rs826647	0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs826648	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826650	0.94[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs826651	0.94[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.95[ASN][1000 genomes]
rs826652	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs826655	0.83[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs826656	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826657	0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826658	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs826659	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826660	0.83[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826661	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs826662	0.89[ASN][1000 genomes]
rs826663	0.89[ASN][1000 genomes]
rs826664	0.89[ASN][1000 genomes]
rs826786	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs826788	0.89[JPT][hapmap]
rs826793	0.91[JPT][hapmap]
rs826802	0.81[JPT][hapmap]
rs826812	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs826813	0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs826814	0.83[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs826823	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs872713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs826645	OR6W1P	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147128400-147130800	Enhancers	Fetal Lung	lung
2	chr7:147128600-147129800	Enhancers	Fetal Kidney	kidney
3	chr7:147129000-147130000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:147129000-147130000	Enhancers	Brain Hippocampus Middle	brain
5	chr7:147129000-147132200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:147129200-147129800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:147129200-147130000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:147129400-147129600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:147129400-147130000	Enhancers	Osteobl	bone

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