Variant report

Variant	rs6464815
Chromosome Location	chr7:147184282-147184283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1018991	1.00[CEU][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs10228191	0.81[JPT][hapmap]
rs10236330	0.94[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap]
rs10236883	0.89[YRI][hapmap]
rs10239550	0.81[JPT][hapmap]
rs10264424	0.81[JPT][hapmap]
rs10265626	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10267232	1.00[CEU][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs1304809	0.90[JPT][hapmap]
rs13230403	0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1479841	0.81[JPT][hapmap]
rs1479842	0.81[JPT][hapmap]
rs1528532	0.81[CHB][hapmap]
rs1585815	0.96[GIH][hapmap];0.90[JPT][hapmap]
rs1842275	0.81[JPT][hapmap]
rs2620472	0.81[JPT][hapmap]
rs2620475	0.81[JPT][hapmap]
rs2692131	0.81[JPT][hapmap]
rs2697452	0.90[JPT][hapmap]
rs2697453	0.81[JPT][hapmap]
rs2697457	0.90[JPT][hapmap]
rs28430910	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6973129	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs700293	0.85[GIH][hapmap];0.90[JPT][hapmap]
rs700296	0.88[GIH][hapmap];0.86[JPT][hapmap]
rs700299	0.93[GIH][hapmap];0.81[JPT][hapmap]
rs700300	0.81[JPT][hapmap]
rs700301	0.81[JPT][hapmap]
rs700306	0.81[JPT][hapmap]
rs700308	0.89[GIH][hapmap]
rs700311	0.90[JPT][hapmap]
rs7778880	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs7779464	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7780096	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs826641	0.81[JPT][hapmap]
rs826642	0.82[CHB][hapmap]
rs826645	0.90[JPT][hapmap]
rs826647	0.81[JPT][hapmap]
rs826649	0.85[JPT][hapmap]
rs826650	0.81[JPT][hapmap]
rs826651	0.81[JPT][hapmap]
rs826652	0.81[JPT][hapmap]
rs826655	0.93[GIH][hapmap];0.81[JPT][hapmap]
rs826656	0.90[JPT][hapmap]
rs826657	0.93[GIH][hapmap];0.90[JPT][hapmap]
rs826658	0.90[JPT][hapmap]
rs826659	0.90[JPT][hapmap]
rs826660	0.89[GIH][hapmap];0.90[JPT][hapmap]
rs826661	0.90[JPT][hapmap]
rs826786	0.89[GIH][hapmap];0.90[JPT][hapmap]
rs826793	0.81[JPT][hapmap]
rs826812	0.90[JPT][hapmap]
rs826813	0.81[JPT][hapmap]
rs826814	0.81[JPT][hapmap]
rs826823	0.90[JPT][hapmap]
rs872713	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6464815	OR2A14	cis	cerebellum	SCAN
rs6464815	CDK5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147183200-147188600	Weak transcription	Muscle Satellite Cultured Cells	--

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