Variant report

Variant	rs700311
Chromosome Location	chr7:147096885-147096886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146963308..146964971-chr7:147095158..147097762,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10228191	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs10236330	0.86[JPT][hapmap]
rs10239550	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs10264424	0.91[JPT][hapmap]
rs10265626	0.91[JPT][hapmap]
rs12112534	0.95[ASN][1000 genomes]
rs1304809	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13230403	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs1479841	0.91[JPT][hapmap]
rs1479842	0.91[JPT][hapmap]
rs1479847	0.87[ASN][1000 genomes]
rs1528514	0.85[YRI][hapmap]
rs1528532	0.85[JPT][hapmap]
rs1585815	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1842275	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950033	0.85[YRI][hapmap]
rs2620438	0.87[ASN][1000 genomes]
rs2620472	0.91[JPT][hapmap]
rs2620475	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2692131	0.91[JPT][hapmap]
rs2697452	0.96[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2697453	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2697457	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28546178	0.81[JPT][hapmap]
rs4726854	0.83[YRI][hapmap]
rs4726858	0.85[YRI][hapmap]
rs6464796	0.85[YRI][hapmap]
rs6464815	0.90[JPT][hapmap]
rs6948780	0.85[YRI][hapmap]
rs700293	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs700296	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs700298	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs700299	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs700300	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs700301	0.90[CHB][hapmap];0.91[JPT][hapmap]
rs700306	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs700308	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs700312	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs700313	1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs826641	0.91[JPT][hapmap]
rs826642	0.87[JPT][hapmap]
rs826645	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs826646	0.89[ASN][1000 genomes]
rs826647	0.80[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs826648	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826649	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826650	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs826651	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs826652	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs826655	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs826656	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs826657	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[ASN][1000 genomes]
rs826658	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs826659	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs826660	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs826661	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs826662	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs826663	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs826664	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs826786	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs826788	0.90[JPT][hapmap]
rs826793	0.91[JPT][hapmap]
rs826802	0.81[JPT][hapmap]
rs826812	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs826813	0.90[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs826814	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs826823	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs872713	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
3	nsv517892	chr7:147096186-147097358	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147096200-147097400	Weak transcription	Fetal Lung	lung
3	chr7:147096400-147097200	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links