Variant report

Variant	rs1528514
Chromosome Location	chr7:147097358-147097359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146963308..146964971-chr7:147095158..147097762,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10239550	0.87[YRI][hapmap]
rs10500181	0.84[CHD][hapmap]
rs10500184	0.84[CHD][hapmap]
rs11972754	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11977189	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11981369	0.82[CHD][hapmap]
rs11981922	0.88[CHD][hapmap]
rs12113127	0.81[CHD][hapmap]
rs12530837	0.88[CHD][hapmap]
rs12531630	0.83[CHD][hapmap]
rs12536060	0.83[CHD][hapmap]
rs12703906	0.83[CHD][hapmap]
rs13238010	0.81[CHB][hapmap]
rs1404699	0.82[ASW][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs1525218	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs1525219	0.95[CHB][hapmap]
rs1528523	0.80[GIH][hapmap];0.82[TSI][hapmap]
rs1528529	0.90[CHD][hapmap]
rs1542566	0.90[CHD][hapmap];0.90[JPT][hapmap]
rs1585816	0.85[JPT][hapmap]
rs1608786	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs17170498	0.83[CHD][hapmap]
rs1819068	0.85[JPT][hapmap]
rs1950033	0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2697457	0.87[YRI][hapmap]
rs4467862	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4621717	0.90[CHD][hapmap]
rs4725717	0.91[CHB][hapmap];0.96[ASN][1000 genomes]
rs4725718	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4725719	0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4726849	0.81[CHD][hapmap]
rs4726850	0.84[CHD][hapmap]
rs4726852	0.84[CHD][hapmap]
rs4726854	0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4726857	0.94[ASN][1000 genomes]
rs4726858	0.91[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62481228	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6464796	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6464797	0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6464798	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945022	0.83[CHD][hapmap]
rs6948780	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6964021	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs6967848	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6973542	0.83[CHD][hapmap]
rs6977497	0.83[CHD][hapmap]
rs6977519	0.83[CHD][hapmap]
rs6977702	0.83[CHD][hapmap]
rs700299	0.87[YRI][hapmap]
rs700300	0.87[YRI][hapmap]
rs700306	0.87[YRI][hapmap]
rs700311	0.85[YRI][hapmap]
rs700313	0.87[YRI][hapmap]
rs721123	0.83[CHD][hapmap]
rs7783311	0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788700	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788729	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788870	0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7788875	0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803315	0.82[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs7803877	0.84[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7803992	0.91[ASW][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs7805259	0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826652	0.87[YRI][hapmap]
rs826655	0.87[YRI][hapmap]
rs826656	0.85[YRI][hapmap]
rs826658	0.85[YRI][hapmap]
rs826659	0.85[YRI][hapmap]
rs826660	0.87[YRI][hapmap]
rs826664	0.85[YRI][hapmap]
rs826814	0.87[YRI][hapmap]
rs899617	0.83[CHD][hapmap]
rs899621	0.80[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
3	nsv517892	chr7:147096186-147097358	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147096200-147097400	Weak transcription	Fetal Lung	lung
3	chr7:147097000-147097400	Enhancers	Osteobl	bone
4	chr7:147097200-147097400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:147097200-147097400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:147097200-147097400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:147097200-147097400	Active TSS	Adipose Nuclei	Adipose
8	chr7:147097200-147097400	Enhancers	HSMMtube	muscle
9	chr7:147097200-147097400	Enhancers	NHDF-Ad	bronchial
10	chr7:147097200-147097600	Enhancers	Fetal Brain Male	brain
11	chr7:147097200-147097600	Enhancers	Ovary	ovary
12	chr7:147097200-147097800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:147097200-147097800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:147097200-147098000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr7:147097200-147098200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:147097200-147098400	Enhancers	HSMM	muscle

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