Variant report

Variant	rs11981369
Chromosome Location	chr7:147167173-147167174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1015932	0.85[ASW][hapmap]
rs1018992	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1018995	1.00[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500176	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs10500181	0.85[CHB][hapmap];0.88[CHD][hapmap];0.86[MEX][hapmap]
rs10500184	0.85[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap]
rs10500186	0.95[CHB][hapmap]
rs11974837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap]
rs11981922	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap]
rs12113127	0.84[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs12155219	0.85[CHB][hapmap]
rs12530837	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap]
rs12531159	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12531630	0.85[CHB][hapmap];0.85[CHD][hapmap];0.86[MEX][hapmap]
rs12531963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12536060	0.89[CEU][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs12536085	0.83[JPT][hapmap]
rs12536336	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12538269	0.83[JPT][hapmap]
rs12539907	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap]
rs12703904	0.88[JPT][hapmap]
rs12703905	0.82[JPT][hapmap]
rs12703906	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs13238589	0.80[CHB][hapmap]
rs13238822	0.85[CHB][hapmap]
rs13245441	0.94[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap]
rs1404700	0.83[JPT][hapmap]
rs1404702	0.83[JPT][hapmap]
rs1525218	0.82[CHD][hapmap]
rs1525219	0.85[JPT][hapmap]
rs1528514	0.82[CHD][hapmap]
rs1528529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16883356	0.85[CHB][hapmap];0.80[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap]
rs17170415	0.89[CEU][hapmap]
rs17170498	0.95[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap]
rs2286127	1.00[ASW][hapmap];0.95[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2373130	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs4142824	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs4621717	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4725717	0.85[JPT][hapmap]
rs4725719	0.80[CHD][hapmap];0.84[JPT][hapmap]
rs4726841	0.85[CHB][hapmap]
rs4726843	0.85[CHB][hapmap]
rs4726844	0.94[JPT][hapmap]
rs4726845	0.82[JPT][hapmap]
rs4726849	0.85[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap]
rs4726850	0.85[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap]
rs4726851	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4726852	0.85[CHB][hapmap];0.88[CHD][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap]
rs4726858	0.85[JPT][hapmap]
rs6464797	0.85[JPT][hapmap]
rs6945022	0.81[CHD][hapmap];0.94[JPT][hapmap]
rs6945513	0.83[JPT][hapmap]
rs6945627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6952525	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs6954016	0.83[CEU][hapmap]
rs6968564	0.94[CEU][hapmap];0.80[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6972649	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs6973370	0.83[JPT][hapmap]
rs6973542	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs6976677	0.89[CEU][hapmap];0.82[JPT][hapmap]
rs6977497	0.89[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs6977507	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs6977519	0.89[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs6977702	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs721123	0.89[CEU][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap]
rs721124	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs729565	0.85[CHB][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap]
rs7458418	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs747139	0.83[JPT][hapmap]
rs747140	0.83[JPT][hapmap]
rs7783311	0.94[JPT][hapmap]
rs7788729	0.84[JPT][hapmap]
rs7788870	0.85[JPT][hapmap]
rs7788875	0.85[JPT][hapmap]
rs7803315	0.90[JPT][hapmap]
rs7803877	0.85[JPT][hapmap]
rs7805259	0.89[JPT][hapmap]
rs899617	0.83[CHD][hapmap];0.88[JPT][hapmap]
rs899619	0.88[JPT][hapmap]
rs917127	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9648846	0.85[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11981369	C7orf33	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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