Variant report

Variant	rs1018995
Chromosome Location	chr7:147176940-147176941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1015932	0.85[ASW][hapmap]
rs1018992	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500176	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs10500184	0.82[JPT][hapmap]
rs10500186	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs11974837	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap]
rs11981369	1.00[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.87[YRI][hapmap]
rs11981922	0.92[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.90[YRI][hapmap]
rs12113127	0.84[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap]
rs12530837	0.92[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap]
rs12531159	0.82[JPT][hapmap]
rs12531963	0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap]
rs12536060	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs12536085	0.81[JPT][hapmap]
rs12536336	0.82[JPT][hapmap]
rs12538269	0.81[JPT][hapmap]
rs12539907	0.88[JPT][hapmap];0.95[YRI][hapmap]
rs12703904	0.87[JPT][hapmap]
rs12703905	0.80[JPT][hapmap]
rs12703906	0.81[JPT][hapmap]
rs13245441	0.94[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap]
rs1404700	0.81[JPT][hapmap]
rs1404702	0.81[JPT][hapmap]
rs1528529	0.89[CEU][hapmap];0.84[CHB][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.90[TSI][hapmap]
rs16883356	0.82[JPT][hapmap]
rs17170498	0.84[CHB][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap]
rs2286127	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2373130	0.94[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs4142824	0.86[JPT][hapmap]
rs4621717	0.84[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.90[TSI][hapmap]
rs4726844	0.88[JPT][hapmap]
rs4726849	0.82[JPT][hapmap]
rs4726850	0.82[JPT][hapmap]
rs4726851	0.81[JPT][hapmap]
rs4726852	0.82[JPT][hapmap]
rs6945022	0.88[JPT][hapmap]
rs6945513	0.81[JPT][hapmap]
rs6945627	0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs6952525	0.81[JPT][hapmap]
rs6954016	0.82[JPT][hapmap]
rs6968564	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6972649	0.81[JPT][hapmap]
rs6973370	0.81[JPT][hapmap]
rs6973542	0.81[JPT][hapmap]
rs6976677	0.81[JPT][hapmap]
rs6977497	0.81[GIH][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs6977507	0.81[JPT][hapmap]
rs6977519	0.81[GIH][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs6977702	0.81[JPT][hapmap]
rs721123	0.81[GIH][hapmap];0.81[JPT][hapmap];0.86[TSI][hapmap]
rs721124	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs7458418	0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap]
rs747139	0.81[JPT][hapmap]
rs747140	0.81[JPT][hapmap]
rs7783311	0.87[JPT][hapmap]
rs7803315	0.82[JPT][hapmap]
rs7805259	0.82[JPT][hapmap]
rs899617	0.81[JPT][hapmap]
rs899619	0.86[JPT][hapmap]
rs917127	0.94[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs9648846	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147176200-147180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:147176400-147177800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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