Variant report

Variant	rs12539907
Chromosome Location	chr7:147144359-147144360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1018992	0.85[EUR][1000 genomes]
rs1018995	0.88[JPT][hapmap];0.95[YRI][hapmap];0.85[EUR][1000 genomes]
rs10500176	0.94[JPT][hapmap]
rs10500181	0.82[JPT][hapmap]
rs10500184	0.81[CHB][hapmap]
rs10500186	0.90[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11974837	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11981369	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap]
rs11981922	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12113127	0.89[JPT][hapmap]
rs12155219	0.81[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs12530837	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs12531159	0.81[CHB][hapmap]
rs12531630	0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12531963	0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs12532315	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12536060	0.94[JPT][hapmap]
rs12536085	0.94[JPT][hapmap]
rs12536336	0.81[CHB][hapmap]
rs12538269	0.94[JPT][hapmap]
rs12703904	1.00[JPT][hapmap]
rs12703905	0.94[JPT][hapmap]
rs12703906	0.94[JPT][hapmap]
rs13229513	0.81[ASN][1000 genomes]
rs13238010	0.89[JPT][hapmap]
rs13238589	0.88[JPT][hapmap]
rs13238822	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs13245441	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1404699	0.84[JPT][hapmap]
rs1404700	0.94[JPT][hapmap]
rs1404701	0.83[EUR][1000 genomes]
rs1404702	0.94[JPT][hapmap]
rs1525218	0.84[JPT][hapmap]
rs1528529	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542566	0.84[JPT][hapmap]
rs1585816	0.89[JPT][hapmap]
rs1608786	0.85[JPT][hapmap]
rs17170415	0.85[JPT][hapmap]
rs17170498	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1819068	0.89[JPT][hapmap]
rs1871491	0.86[ASN][1000 genomes]
rs1950033	0.85[JPT][hapmap]
rs2286127	0.81[CHB][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes]
rs2373130	0.95[CHB][hapmap];0.83[JPT][hapmap];0.95[YRI][hapmap]
rs4142824	0.81[CHB][hapmap]
rs4467862	0.85[JPT][hapmap]
rs4621717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4726841	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4726843	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs4726844	0.85[JPT][hapmap]
rs4726845	0.94[JPT][hapmap]
rs4726849	0.81[CHB][hapmap]
rs4726850	0.81[CHB][hapmap]
rs4726851	0.81[CHB][hapmap]
rs4726852	0.81[CHB][hapmap]
rs4726854	0.85[JPT][hapmap]
rs62481222	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6464796	0.85[JPT][hapmap]
rs6945022	0.84[JPT][hapmap]
rs6945513	0.94[JPT][hapmap]
rs6945627	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap]
rs6948780	0.85[JPT][hapmap]
rs6952525	0.94[JPT][hapmap]
rs6954016	0.92[JPT][hapmap]
rs6954639	0.89[JPT][hapmap]
rs6964021	0.84[JPT][hapmap]
rs6968564	0.86[JPT][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6972649	0.94[JPT][hapmap]
rs6973370	0.94[JPT][hapmap]
rs6973542	0.94[JPT][hapmap]
rs6976677	0.94[JPT][hapmap]
rs6977497	0.94[JPT][hapmap]
rs6977507	0.94[JPT][hapmap]
rs6977519	0.94[JPT][hapmap]
rs6977702	0.94[JPT][hapmap]
rs721123	0.94[JPT][hapmap]
rs721124	0.94[JPT][hapmap]
rs729565	0.88[JPT][hapmap]
rs73158357	0.82[AMR][1000 genomes]
rs7458418	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs747139	0.94[JPT][hapmap]
rs747140	0.94[JPT][hapmap]
rs7783311	0.84[JPT][hapmap]
rs7791755	0.89[JPT][hapmap]
rs7803992	0.84[JPT][hapmap]
rs7805259	0.80[JPT][hapmap]
rs899617	0.94[JPT][hapmap]
rs899619	1.00[JPT][hapmap]
rs899621	0.88[JPT][hapmap]
rs917127	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9648846	0.81[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3394594	chr7:147144069-147146967	Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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