Variant report

Variant	rs1819068
Chromosome Location	chr7:147136221-147136222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10228191	0.82[YRI][hapmap]
rs10259368	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs10264424	0.82[YRI][hapmap]
rs10265626	0.82[YRI][hapmap]
rs10500176	0.83[JPT][hapmap]
rs11972754	0.82[ASN][1000 genomes]
rs11974837	0.89[JPT][hapmap]
rs11977189	0.82[ASN][1000 genomes]
rs11981922	0.89[JPT][hapmap]
rs11982446	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs12536060	0.83[JPT][hapmap]
rs12536085	0.83[JPT][hapmap]
rs12538269	0.83[JPT][hapmap]
rs12539907	0.89[JPT][hapmap]
rs12703904	0.89[JPT][hapmap]
rs12703905	0.82[JPT][hapmap]
rs12703906	0.83[JPT][hapmap]
rs13230403	0.82[YRI][hapmap]
rs13245441	0.88[JPT][hapmap]
rs1404699	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs1404700	0.83[JPT][hapmap]
rs1404702	0.83[JPT][hapmap]
rs1525218	0.87[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1525219	0.87[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs1528507	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1528514	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1528519	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1528521	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1528529	0.89[JPT][hapmap]
rs1528532	0.82[YRI][hapmap]
rs1542566	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs1585815	0.82[YRI][hapmap]
rs1585816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1608786	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1950033	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2286125	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2888505	0.83[CHB][hapmap]
rs4467862	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs4621717	0.89[JPT][hapmap]
rs4725717	0.88[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4725718	0.82[ASN][1000 genomes]
rs4725719	0.82[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs4725736	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4726845	0.82[JPT][hapmap]
rs4726854	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4726857	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4726858	0.88[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4726875	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs62481228	0.96[ASN][1000 genomes]
rs6464796	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6464797	0.83[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs6464798	0.82[ASN][1000 genomes]
rs6464801	1.00[YRI][hapmap]
rs6945513	0.83[JPT][hapmap]
rs6948780	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6952525	0.83[JPT][hapmap]
rs6964021	0.94[JPT][hapmap]
rs6967848	0.82[ASN][1000 genomes]
rs6972649	0.83[JPT][hapmap]
rs6973370	0.83[JPT][hapmap]
rs6973542	0.83[JPT][hapmap]
rs6976677	0.83[JPT][hapmap]
rs6977497	0.83[JPT][hapmap]
rs6977507	0.83[JPT][hapmap]
rs6977519	0.83[JPT][hapmap]
rs6977702	0.83[JPT][hapmap]
rs721123	0.83[JPT][hapmap]
rs721124	0.83[JPT][hapmap]
rs747139	0.83[JPT][hapmap]
rs747140	0.83[JPT][hapmap]
rs7782445	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7783311	0.82[ASN][1000 genomes]
rs7788700	0.82[ASN][1000 genomes]
rs7788729	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7788870	0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7788875	0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs7795712	0.82[EUR][1000 genomes]
rs7796028	0.86[EUR][1000 genomes]
rs7800366	0.86[EUR][1000 genomes]
rs7803315	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs7803877	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7803992	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs7805259	0.83[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs826642	0.82[YRI][hapmap]
rs826647	0.82[YRI][hapmap]
rs826650	0.82[YRI][hapmap]
rs826651	0.82[YRI][hapmap]
rs899617	0.82[JPT][hapmap]
rs899619	0.88[JPT][hapmap]
rs899621	0.80[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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