Variant report

Variant	rs7782445
Chromosome Location	chr7:147180869-147180870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147159444..147161604-chr7:147180617..147182993,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10236878	0.83[JPT][hapmap]
rs10242834	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs10245926	0.83[JPT][hapmap];0.90[YRI][hapmap]
rs10259368	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10266867	0.82[JPT][hapmap]
rs10282302	0.82[JPT][hapmap]
rs11976387	0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11982152	0.83[JPT][hapmap]
rs11982446	1.00[CEU][hapmap]
rs12111800	0.83[JPT][hapmap]
rs12112731	0.83[JPT][hapmap]
rs12113038	0.82[JPT][hapmap]
rs1525218	0.83[CEU][hapmap]
rs1525219	0.84[CEU][hapmap]
rs1528507	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528519	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528521	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534553	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs1585816	1.00[CEU][hapmap]
rs1608786	0.85[CEU][hapmap]
rs16883526	0.82[JPT][hapmap];0.95[YRI][hapmap]
rs16883529	0.83[JPT][hapmap];0.90[YRI][hapmap]
rs1819068	1.00[CEU][hapmap]
rs1919190	0.82[JPT][hapmap]
rs1919191	0.83[JPT][hapmap];0.90[YRI][hapmap]
rs1950033	0.85[CEU][hapmap]
rs2107855	0.81[AFR][1000 genomes]
rs2107856	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs2107857	0.81[AFR][1000 genomes]
rs2141388	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs2141389	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs2222764	0.82[JPT][hapmap];0.95[YRI][hapmap]
rs2286125	0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2373099	0.83[JPT][hapmap]
rs2373100	0.83[JPT][hapmap]
rs2888489	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs2888490	0.83[JPT][hapmap];0.90[YRI][hapmap]
rs2888491	0.83[JPT][hapmap];0.89[YRI][hapmap]
rs4467862	0.85[CEU][hapmap]
rs4725717	0.85[CEU][hapmap]
rs4725736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725739	0.95[YRI][hapmap]
rs4725740	0.95[YRI][hapmap]
rs4726854	0.85[CEU][hapmap]
rs4726858	0.85[CEU][hapmap]
rs4726875	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4726877	0.83[JPT][hapmap];0.95[YRI][hapmap]
rs6464796	0.85[CEU][hapmap]
rs6948780	0.85[CEU][hapmap]
rs6956932	0.83[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs6961608	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs6973129	0.95[YRI][hapmap]
rs6978820	0.82[JPT][hapmap];0.95[YRI][hapmap]
rs7778685	0.83[JPT][hapmap];0.90[YRI][hapmap]
rs7795712	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7796028	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800366	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147180400-147181800	Enhancers	NHDF-Ad	bronchial
2	chr7:147180600-147181800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:147180600-147183200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:147180800-147181000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:147180800-147182200	Enhancers	Osteobl	bone

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