Variant report

Variant	rs6464796
Chromosome Location	chr7:147099563-147099564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10239550	0.87[YRI][hapmap]
rs10500176	0.90[JPT][hapmap]
rs11972754	0.96[ASN][1000 genomes]
rs11974837	0.85[JPT][hapmap]
rs11977189	0.96[ASN][1000 genomes]
rs11981922	0.84[JPT][hapmap]
rs11982446	0.84[CEU][hapmap]
rs12113127	0.83[JPT][hapmap]
rs12536060	0.89[JPT][hapmap]
rs12536085	0.89[JPT][hapmap]
rs12538269	0.90[JPT][hapmap]
rs12539907	0.85[JPT][hapmap]
rs12703904	0.89[JPT][hapmap]
rs12703905	0.89[JPT][hapmap]
rs12703906	0.89[JPT][hapmap]
rs13238010	0.85[JPT][hapmap]
rs13238589	0.84[JPT][hapmap]
rs13245441	0.83[JPT][hapmap]
rs1404699	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs1404700	0.90[JPT][hapmap]
rs1404702	0.90[JPT][hapmap]
rs1525218	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1525219	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1528514	0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1528529	0.84[JPT][hapmap]
rs1542566	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs1585816	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1608786	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1819068	0.88[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1950033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2697457	0.87[YRI][hapmap]
rs2888472	0.92[CEU][hapmap]
rs4467862	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4621717	0.84[JPT][hapmap]
rs4725717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4725718	0.96[ASN][1000 genomes]
rs4725719	0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs4725736	0.83[CEU][hapmap]
rs4726841	0.85[JPT][hapmap]
rs4726843	0.85[JPT][hapmap]
rs4726845	0.89[JPT][hapmap]
rs4726854	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726857	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4726858	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62481228	0.86[ASN][1000 genomes]
rs6464797	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6464798	0.96[ASN][1000 genomes]
rs6945513	0.90[JPT][hapmap]
rs6948780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6952525	0.90[JPT][hapmap]
rs6954016	0.86[JPT][hapmap]
rs6954639	0.84[JPT][hapmap]
rs6964021	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6967848	0.96[ASN][1000 genomes]
rs6972649	0.89[JPT][hapmap]
rs6973370	0.90[JPT][hapmap]
rs6973542	0.89[JPT][hapmap]
rs6976677	0.89[JPT][hapmap]
rs6977497	0.89[JPT][hapmap]
rs6977507	0.90[JPT][hapmap]
rs6977519	0.89[JPT][hapmap]
rs6977702	0.89[JPT][hapmap]
rs700299	0.87[YRI][hapmap]
rs700300	0.87[YRI][hapmap]
rs700306	0.87[YRI][hapmap]
rs700311	0.85[YRI][hapmap]
rs700313	0.87[YRI][hapmap]
rs721123	0.89[JPT][hapmap]
rs721124	0.90[JPT][hapmap]
rs729565	0.84[JPT][hapmap]
rs747139	0.89[JPT][hapmap]
rs747140	0.90[JPT][hapmap]
rs7782445	0.85[CEU][hapmap]
rs7783311	0.81[CHB][hapmap];0.96[ASN][1000 genomes]
rs7788700	0.96[ASN][1000 genomes]
rs7788729	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7788870	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7788875	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7791755	0.83[JPT][hapmap]
rs7803315	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7803877	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs7803992	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs7805259	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs826652	0.87[YRI][hapmap]
rs826655	0.87[YRI][hapmap]
rs826656	0.85[YRI][hapmap]
rs826658	0.85[YRI][hapmap]
rs826659	0.85[YRI][hapmap]
rs826660	0.87[YRI][hapmap]
rs826664	0.85[YRI][hapmap]
rs826814	0.87[YRI][hapmap]
rs899617	0.88[JPT][hapmap]
rs899619	0.88[JPT][hapmap]
rs899621	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097800-147107600	Weak transcription	NHDF-Ad	bronchial
3	chr7:147098400-147103600	Weak transcription	HSMMtube	muscle
4	chr7:147098600-147103200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:147098800-147103200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:147098800-147103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:147098800-147107800	Weak transcription	Osteobl	bone
8	chr7:147099000-147103200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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