Variant report

Variant	rs2888472
Chromosome Location	chr7:147095040-147095041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11972754	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11977189	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1404699	0.87[CEU][hapmap]
rs1525218	0.91[CEU][hapmap]
rs1525219	0.92[CEU][hapmap]
rs1528514	0.94[ASN][1000 genomes]
rs1542566	0.87[CEU][hapmap]
rs1608786	0.92[CEU][hapmap]
rs1950033	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4467862	0.92[CEU][hapmap]
rs4725717	0.92[CEU][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4725718	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4725719	0.90[ASN][1000 genomes]
rs4726854	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4726857	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4726858	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62481228	0.82[ASN][1000 genomes]
rs6464796	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6464797	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6464798	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6948780	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967848	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7783311	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7788700	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7788729	0.92[ASN][1000 genomes]
rs7788870	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7788875	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7803877	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7803992	0.87[CEU][hapmap]
rs7805259	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs899621	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
3	esv3446991	chr7:147095040-147095310	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3435189	chr7:147095041-147095451	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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