Variant report

Variant	rs899621
Chromosome Location	chr7:147097741-147097742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146963308..146964971-chr7:147095158..147097762,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10500176	0.94[JPT][hapmap]
rs10500181	0.81[JPT][hapmap]
rs11972754	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11974837	0.88[JPT][hapmap]
rs11976387	0.91[CEU][hapmap]
rs11977189	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11981922	0.87[JPT][hapmap]
rs12113127	0.86[JPT][hapmap]
rs12155219	0.82[JPT][hapmap]
rs12531630	0.81[JPT][hapmap]
rs12532315	0.81[JPT][hapmap]
rs12536060	0.94[JPT][hapmap]
rs12536085	0.93[JPT][hapmap]
rs12538269	0.94[JPT][hapmap]
rs12539907	0.88[JPT][hapmap]
rs12703904	0.93[JPT][hapmap]
rs12703905	0.93[JPT][hapmap]
rs12703906	0.94[JPT][hapmap]
rs13238010	0.88[JPT][hapmap]
rs13238589	0.87[JPT][hapmap]
rs13238822	0.82[JPT][hapmap]
rs13245441	0.86[JPT][hapmap]
rs1404699	1.00[JPT][hapmap]
rs1404700	0.94[JPT][hapmap]
rs1404702	0.94[JPT][hapmap]
rs1525218	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1525219	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1528514	0.80[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528523	0.90[CEU][hapmap]
rs1528529	0.87[JPT][hapmap]
rs1542566	1.00[JPT][hapmap]
rs1585816	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1608786	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs17170415	0.82[JPT][hapmap]
rs1819068	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1950033	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2620475	0.89[YRI][hapmap]
rs4467862	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4621717	0.87[JPT][hapmap]
rs4725717	0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4725718	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4725719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4726841	0.88[JPT][hapmap]
rs4726843	0.88[JPT][hapmap]
rs4726844	0.82[JPT][hapmap]
rs4726845	0.94[JPT][hapmap]
rs4726854	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4726857	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4726858	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs62481228	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6464796	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6464797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6464798	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6945022	0.81[JPT][hapmap]
rs6945513	0.94[JPT][hapmap]
rs6948780	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6952525	0.94[JPT][hapmap]
rs6954016	0.92[JPT][hapmap]
rs6954639	0.94[JPT][hapmap]
rs6964021	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6967848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6972649	0.94[JPT][hapmap]
rs6973370	0.94[JPT][hapmap]
rs6973542	0.94[JPT][hapmap]
rs6976677	0.94[JPT][hapmap]
rs6977497	0.94[JPT][hapmap]
rs6977507	0.94[JPT][hapmap]
rs6977519	0.94[JPT][hapmap]
rs6977702	0.94[JPT][hapmap]
rs721123	0.94[JPT][hapmap]
rs721124	0.94[JPT][hapmap]
rs729565	0.87[JPT][hapmap]
rs747139	0.94[JPT][hapmap]
rs747140	0.94[JPT][hapmap]
rs7783311	0.89[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7788700	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7788729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7788870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7788875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7791755	0.86[JPT][hapmap]
rs7803315	0.90[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7803877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7803992	1.00[JPT][hapmap]
rs7805259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs899617	0.93[JPT][hapmap]
rs899619	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097200-147097800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:147097200-147097800	Weak transcription	Brain Germinal Matrix	brain
4	chr7:147097200-147098000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr7:147097200-147098200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:147097200-147098400	Enhancers	HSMM	muscle
7	chr7:147097400-147097800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:147097400-147097800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:147097400-147097800	Active TSS	Right Atrium	heart
10	chr7:147097400-147097800	Flanking Active TSS	HSMMtube	muscle
11	chr7:147097400-147097800	Active TSS	NHDF-Ad	bronchial
12	chr7:147097400-147097800	Active TSS	NHLF	lung
13	chr7:147097400-147098000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:147097400-147098000	Active TSS	Duodenum Mucosa	Duodenum
15	chr7:147097400-147098200	Flanking Active TSS	Osteobl	bone
16	chr7:147097600-147097800	Active TSS	Fetal Lung	lung
17	chr7:147097600-147098000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr7:147097600-147098200	Enhancers	Adipose Nuclei	Adipose

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