Variant report

Variant	rs7788729
Chromosome Location	chr7:147102910-147102911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10500176	0.80[JPT][hapmap]
rs11972754	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11976387	0.88[CEU][hapmap]
rs11977189	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981369	0.84[JPT][hapmap]
rs12530837	0.84[JPT][hapmap]
rs12531159	0.80[JPT][hapmap]
rs12531963	0.85[JPT][hapmap]
rs12536336	0.80[JPT][hapmap]
rs12538269	0.80[JPT][hapmap]
rs1404699	0.89[JPT][hapmap]
rs1404700	0.80[JPT][hapmap]
rs1404702	0.80[JPT][hapmap]
rs1525218	0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1525219	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1528514	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1528523	0.88[CEU][hapmap]
rs1542566	0.89[JPT][hapmap]
rs1585816	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs1608786	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[YRI][hapmap]
rs16883356	0.84[JPT][hapmap]
rs1819068	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1950033	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2620475	0.89[YRI][hapmap]
rs4142824	0.88[JPT][hapmap]
rs4467862	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs4725717	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4725718	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4726844	0.90[JPT][hapmap]
rs4726854	0.91[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs4726857	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4726858	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs62481228	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6464796	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs6464797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6464798	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945022	0.89[JPT][hapmap]
rs6945513	0.80[JPT][hapmap]
rs6945627	0.85[JPT][hapmap]
rs6948780	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs6952525	0.80[JPT][hapmap]
rs6964021	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6967848	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6973370	0.80[JPT][hapmap]
rs6977507	0.80[JPT][hapmap]
rs721124	0.80[JPT][hapmap]
rs7458418	0.85[JPT][hapmap]
rs747140	0.80[JPT][hapmap]
rs7783311	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788700	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803315	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7803877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7803992	0.89[JPT][hapmap]
rs7805259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899617	0.83[JPT][hapmap]
rs899621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs917127	0.85[JPT][hapmap]
rs9648846	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv19143	chr7:147102850-147104109	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097800-147107600	Weak transcription	NHDF-Ad	bronchial
3	chr7:147098400-147103600	Weak transcription	HSMMtube	muscle
4	chr7:147098600-147103200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:147098800-147103200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:147098800-147103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:147098800-147107800	Weak transcription	Osteobl	bone
8	chr7:147099000-147103200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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