Variant report

Variant	rs4142824
Chromosome Location	chr7:147076864-147076865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr7:147076661-147076914	HepG2	liver:	n/a	n/a
2	MAFK	chr7:147076622-147076946	HepG2	liver:	n/a	chr7:147076772-147076787
3	MAFK	chr7:147076631-147076877	HepG2	liver:	n/a	chr7:147076772-147076787

Variant related genes	Relation type
MIR548F4	TF binding region

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1018995	0.86[JPT][hapmap]
rs10500176	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10500181	1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap]
rs10500184	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10500186	0.90[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11974837	0.85[CHB][hapmap]
rs11981369	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs11981922	0.85[CHB][hapmap]
rs12113127	0.80[CHB][hapmap]
rs12155219	1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12530837	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12531159	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12531630	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12531963	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs12532315	0.94[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12536060	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12536085	0.80[JPT][hapmap]
rs12536336	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12538269	0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12539907	0.81[CHB][hapmap]
rs12703905	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12703906	0.81[JPT][hapmap]
rs13229513	0.93[ASN][1000 genomes]
rs13238010	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs13238589	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs13238822	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1404700	0.82[JPT][hapmap]
rs1404701	0.81[ASN][1000 genomes]
rs1404702	0.82[JPT][hapmap]
rs1525219	0.89[JPT][hapmap]
rs1528529	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16883356	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs17170415	0.81[CHB][hapmap]
rs17170498	0.90[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1871491	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2286127	0.87[JPT][hapmap]
rs2373130	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs34784405	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4621717	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs4725717	0.89[JPT][hapmap]
rs4725719	0.88[JPT][hapmap]
rs4726841	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4726843	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4726844	0.94[JPT][hapmap]
rs4726845	0.80[JPT][hapmap]
rs4726849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726850	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs4726851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726852	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726858	0.89[JPT][hapmap]
rs62481222	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6464797	0.89[JPT][hapmap]
rs6945022	0.94[JPT][hapmap]
rs6945513	0.82[JPT][hapmap]
rs6945627	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs6952525	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs6954639	0.81[JPT][hapmap]
rs6972649	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs6973370	0.82[JPT][hapmap]
rs6973542	0.81[JPT][hapmap]
rs6976677	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6977497	0.81[JPT][hapmap]
rs6977507	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs6977519	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6977702	0.81[JPT][hapmap]
rs721123	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs721124	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs729565	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs73158357	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7458418	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs747139	0.81[JPT][hapmap]
rs747140	0.81[JPT][hapmap]
rs7783311	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs7788729	0.88[JPT][hapmap]
rs7788870	0.89[JPT][hapmap]
rs7788875	0.89[JPT][hapmap]
rs7791755	0.80[JPT][hapmap]
rs7803315	0.81[JPT][hapmap]
rs7803877	0.88[JPT][hapmap]
rs7805259	0.88[JPT][hapmap]
rs899617	0.86[JPT][hapmap]
rs917127	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs9648846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv970432	chr7:147075290-147080148	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147076600-147077000	Enhancers	Fetal Brain Male	brain

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