Variant report

Variant	rs13238589
Chromosome Location	chr7:147094139-147094140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10500176	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10500181	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10500184	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs10500186	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11974837	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11981369	0.80[CHB][hapmap]
rs11981922	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs12113127	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12155219	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530837	0.80[CHB][hapmap]
rs12531159	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs12531630	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12531963	0.81[CHB][hapmap]
rs12532315	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12536060	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12536085	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12536336	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs12538269	0.94[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12539907	0.88[JPT][hapmap]
rs12703904	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs12703905	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12703906	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs13229513	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13238010	1.00[JPT][hapmap]
rs13238822	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13245441	0.86[JPT][hapmap]
rs1404699	0.83[JPT][hapmap]
rs1404700	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1404701	0.85[ASN][1000 genomes]
rs1404702	0.82[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1525218	0.83[JPT][hapmap]
rs1528529	0.80[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1542566	0.83[JPT][hapmap]
rs1608786	0.84[JPT][hapmap]
rs16883356	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap]
rs17170415	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs17170498	0.93[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1871491	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1950033	0.84[JPT][hapmap]
rs2373130	0.80[CHB][hapmap]
rs34784405	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4142824	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4467862	0.84[JPT][hapmap]
rs4621717	0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4726841	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs4726843	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs4726844	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs4726845	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4726849	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4726850	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap]
rs4726851	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4726852	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs4726854	0.84[JPT][hapmap]
rs62481222	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6464796	0.84[JPT][hapmap]
rs6945022	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs6945513	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs6945627	0.80[CHB][hapmap]
rs6948780	0.84[JPT][hapmap]
rs6952525	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6954016	0.81[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap]
rs6954639	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs6964021	0.83[JPT][hapmap]
rs6968564	0.83[CEU][hapmap]
rs6972649	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs6973370	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs6973542	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs6976677	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6977497	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs6977507	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6977519	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs6977702	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs721123	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs721124	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs729565	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs73158357	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7458418	0.85[CHB][hapmap]
rs747139	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs747140	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs7783311	0.83[JPT][hapmap]
rs7791755	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7803992	0.83[JPT][hapmap]
rs899617	0.93[JPT][hapmap]
rs899619	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs899621	0.87[JPT][hapmap]
rs917127	0.81[CHB][hapmap]
rs9648846	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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