Variant report

Variant	rs13245441
Chromosome Location	chr7:147174373-147174374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1018992	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1018995	0.94[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500176	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs10500181	0.80[JPT][hapmap]
rs10500186	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11974837	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11981369	0.94[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap]
rs11981922	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12113127	0.89[CEU][hapmap];0.87[JPT][hapmap]
rs12155219	0.81[JPT][hapmap]
rs12530837	0.94[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs12531630	0.80[JPT][hapmap]
rs12531963	0.94[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.95[YRI][hapmap]
rs12532315	0.80[JPT][hapmap]
rs12536060	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs12536085	0.93[JPT][hapmap]
rs12538269	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs12539907	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12703904	1.00[JPT][hapmap]
rs12703905	0.94[JPT][hapmap]
rs12703906	0.94[JPT][hapmap]
rs13238010	0.87[JPT][hapmap]
rs13238589	0.86[JPT][hapmap]
rs13238822	0.81[JPT][hapmap]
rs1404699	0.82[JPT][hapmap]
rs1404700	0.94[JPT][hapmap]
rs1404702	0.94[JPT][hapmap]
rs1525218	0.82[JPT][hapmap]
rs1528529	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1542566	0.82[JPT][hapmap]
rs1585816	0.88[JPT][hapmap]
rs1608786	0.83[JPT][hapmap]
rs17170415	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs17170498	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1819068	0.88[JPT][hapmap]
rs1950033	0.83[JPT][hapmap]
rs2286127	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2373130	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap]
rs4467862	0.83[JPT][hapmap]
rs4621717	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[EUR][1000 genomes]
rs4726841	0.87[JPT][hapmap]
rs4726843	0.87[JPT][hapmap]
rs4726844	0.83[JPT][hapmap]
rs4726845	0.93[JPT][hapmap]
rs4726854	0.83[JPT][hapmap]
rs6464796	0.83[JPT][hapmap]
rs6945022	0.82[JPT][hapmap]
rs6945513	0.94[JPT][hapmap]
rs6945627	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap]
rs6948780	0.83[JPT][hapmap]
rs6952525	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs6954016	0.91[JPT][hapmap]
rs6954639	0.94[JPT][hapmap]
rs6964021	0.82[JPT][hapmap]
rs6968564	0.94[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6972649	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs6973370	0.94[JPT][hapmap]
rs6973542	0.94[JPT][hapmap]
rs6976677	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs6977497	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs6977507	0.84[CEU][hapmap];0.94[JPT][hapmap]
rs6977519	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs6977702	0.94[JPT][hapmap]
rs721123	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs721124	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs729565	0.87[JPT][hapmap]
rs7458418	0.95[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs747139	0.94[JPT][hapmap]
rs747140	0.94[JPT][hapmap]
rs7783311	0.83[JPT][hapmap]
rs7791755	0.87[JPT][hapmap]
rs7803992	0.82[JPT][hapmap]
rs899617	0.93[JPT][hapmap]
rs899619	1.00[JPT][hapmap]
rs899621	0.86[JPT][hapmap]
rs917127	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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