Variant report

Variant	rs6964021
Chromosome Location	chr7:147096186-147096187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10500176	0.89[JPT][hapmap]
rs10500181	0.82[CHD][hapmap]
rs10500184	0.82[CHD][hapmap]
rs11972754	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11974837	0.84[JPT][hapmap]
rs11976387	0.88[CEU][hapmap]
rs11977189	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11981922	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs12113127	0.81[CHD][hapmap];0.83[JPT][hapmap]
rs12530837	0.86[CHD][hapmap]
rs12531630	0.84[CHD][hapmap]
rs12536060	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs12536085	0.89[JPT][hapmap]
rs12538269	0.89[JPT][hapmap]
rs12539907	0.84[JPT][hapmap]
rs12703904	0.88[JPT][hapmap]
rs12703905	0.89[JPT][hapmap]
rs12703906	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs13238010	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs13238589	0.83[JPT][hapmap]
rs13245441	0.82[JPT][hapmap]
rs1404699	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs1404700	0.89[JPT][hapmap]
rs1404702	0.89[JPT][hapmap]
rs1525218	0.85[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap]
rs1525219	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs1528514	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1528523	0.88[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap]
rs1528529	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs1542566	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs1585816	0.94[JPT][hapmap]
rs1608786	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1819068	0.94[JPT][hapmap]
rs1950033	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2620475	0.90[YRI][hapmap]
rs4467862	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4621717	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs4725717	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4725718	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4725719	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4726841	0.84[JPT][hapmap]
rs4726843	0.84[JPT][hapmap]
rs4726845	0.88[JPT][hapmap]
rs4726850	0.82[CHD][hapmap]
rs4726852	0.82[CHD][hapmap]
rs4726854	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4726857	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4726858	0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs62481228	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6464796	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6464797	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6464798	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6945022	0.84[CHD][hapmap]
rs6945513	0.89[JPT][hapmap]
rs6948780	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6952525	0.89[JPT][hapmap]
rs6954016	0.86[JPT][hapmap]
rs6954639	0.83[JPT][hapmap]
rs6967848	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972649	0.89[JPT][hapmap]
rs6973370	0.89[JPT][hapmap]
rs6973542	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs6976677	0.89[JPT][hapmap]
rs6977497	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs6977507	0.89[JPT][hapmap]
rs6977519	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs6977702	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs700301	0.81[YRI][hapmap]
rs721123	0.81[CHD][hapmap];0.89[JPT][hapmap]
rs721124	0.89[JPT][hapmap]
rs729565	0.84[JPT][hapmap]
rs747139	0.89[JPT][hapmap]
rs747140	0.89[JPT][hapmap]
rs7783311	0.86[CEU][hapmap];0.90[CHB][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7788700	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7788729	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7788870	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7788875	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7791755	0.83[JPT][hapmap]
rs7803315	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7803877	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7803992	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7805259	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826812	0.81[YRI][hapmap]
rs826813	0.81[YRI][hapmap]
rs899617	0.81[CHD][hapmap];0.88[JPT][hapmap]
rs899619	0.88[JPT][hapmap]
rs899621	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
3	nsv517892	chr7:147096186-147097358	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147096000-147096200	Enhancers	Fetal Lung	lung

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