Variant report

Variant	rs4725719
Chromosome Location	chr7:147104887-147104888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147104454..147106953-chr7:147113755..147116042,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10500181	0.82[CHD][hapmap]
rs10500184	0.82[CHD][hapmap]
rs11972754	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11976387	0.88[CEU][hapmap]
rs11977189	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11981369	0.80[CHD][hapmap];0.84[JPT][hapmap]
rs11981922	0.86[CHD][hapmap]
rs12530837	0.86[CHD][hapmap];0.84[JPT][hapmap]
rs12531630	0.80[CHD][hapmap]
rs12531963	0.84[JPT][hapmap]
rs12536060	0.82[CHD][hapmap]
rs1404699	0.86[CHD][hapmap];0.89[JPT][hapmap]
rs1525218	0.90[CHB][hapmap];0.98[CHD][hapmap];0.89[JPT][hapmap]
rs1525219	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1528514	0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1528523	0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs1528529	0.86[CHD][hapmap]
rs1542566	0.85[CHD][hapmap];0.89[JPT][hapmap]
rs1585816	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs1608786	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs16883356	0.84[JPT][hapmap]
rs1819068	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1950033	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs4142824	0.88[JPT][hapmap]
rs4467862	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4621717	0.86[CHD][hapmap]
rs4725717	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4725718	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4726844	0.89[JPT][hapmap]
rs4726849	0.80[CHD][hapmap]
rs4726850	0.82[CHD][hapmap]
rs4726852	0.82[CHD][hapmap]
rs4726854	0.90[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs4726857	0.99[ASN][1000 genomes]
rs4726858	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs62481228	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6464796	0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs6464797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6464798	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945022	0.89[JPT][hapmap]
rs6945627	0.84[JPT][hapmap]
rs6948780	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs6964021	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6967848	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs721123	0.82[CHD][hapmap]
rs7458418	0.84[JPT][hapmap]
rs7783311	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788700	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7788875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7803315	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7803877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803992	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs7805259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs899617	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs899621	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs917127	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097800-147107600	Weak transcription	NHDF-Ad	bronchial
3	chr7:147098800-147107800	Weak transcription	Osteobl	bone
4	chr7:147103800-147107600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:147104200-147107600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:147104200-147107800	Weak transcription	HSMMtube	muscle
7	chr7:147104200-147108000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:147104200-147108000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:147104200-147108000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr7:147104200-147108000	Weak transcription	HSMM	muscle

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