Variant report

Variant	rs1528523
Chromosome Location	chr7:147177691-147177692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11976387	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982446	0.82[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1528514	0.80[GIH][hapmap];0.82[TSI][hapmap]
rs1528521	0.83[LWK][hapmap]
rs1528524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888505	0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs4725719	0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs62481228	0.83[EUR][1000 genomes]
rs6464797	0.88[CEU][hapmap]
rs6464798	0.88[CEU][hapmap]
rs6964021	0.88[CEU][hapmap];0.80[GIH][hapmap];0.82[TSI][hapmap]
rs7788729	0.88[CEU][hapmap]
rs7788870	0.88[CEU][hapmap]
rs7788875	0.88[CEU][hapmap]
rs7803315	1.00[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs7803877	0.88[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs7805259	0.88[CEU][hapmap]
rs899621	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1528523	NAP1L2	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147176200-147180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:147176400-147177800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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