Variant report

Variant	rs2888505
Chromosome Location	chr7:147172853-147172854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10259368	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11982446	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs1528507	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528519	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528521	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528523	0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1528524	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1585816	0.84[CHB][hapmap]
rs1819068	0.83[CHB][hapmap]
rs2286125	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4725736	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4726875	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7782445	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7795712	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7796028	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7800366	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7803315	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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