Variant report
| Variant | rs7780096 |
|---|---|
| Chromosome Location | chr7:147192559-147192560 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:147190883..147193448-chr7:147193743..147195946,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1018991 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs10228191 | 0.86[JPT][hapmap] |
| rs10236330 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs10239550 | 0.86[JPT][hapmap] |
| rs10264424 | 0.86[JPT][hapmap] |
| rs10265626 | 0.82[CHB][hapmap];0.86[JPT][hapmap] |
| rs10267232 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap] |
| rs10487689 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs13230403 | 0.87[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1842275 | 0.86[JPT][hapmap] |
| rs2620475 | 0.85[JPT][hapmap] |
| rs2697453 | 0.86[JPT][hapmap] |
| rs28430910 | 0.88[ASN][1000 genomes] |
| rs6464815 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6973129 | 1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs700298 | 0.82[JPT][hapmap] |
| rs700299 | 0.85[JPT][hapmap] |
| rs700300 | 0.86[JPT][hapmap] |
| rs700301 | 0.86[JPT][hapmap] |
| rs700306 | 0.86[JPT][hapmap] |
| rs7778880 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7779464 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs826642 | 0.80[JPT][hapmap] |
| rs826647 | 0.86[JPT][hapmap] |
| rs826649 | 0.89[JPT][hapmap] |
| rs826650 | 0.86[JPT][hapmap] |
| rs826651 | 0.84[JPT][hapmap] |
| rs826652 | 0.86[JPT][hapmap] |
| rs826655 | 0.85[JPT][hapmap] |
| rs826813 | 0.86[JPT][hapmap] |
| rs826814 | 0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
