Variant report

Variant	rs7790550
Chromosome Location	chr7:147157377-147157378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10081334	0.92[CEU][hapmap]
rs10232106	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10232280	0.84[EUR][1000 genomes]
rs10251377	0.83[MEX][hapmap]
rs10251521	0.82[EUR][1000 genomes]
rs10254249	1.00[GIH][hapmap]
rs10268483	1.00[GIH][hapmap]
rs10272638	0.83[MEX][hapmap]
rs10276770	1.00[GIH][hapmap];0.91[MEX][hapmap]
rs10281923	0.85[AFR][1000 genomes]
rs11979473	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap]
rs1404709	0.83[EUR][1000 genomes]
rs1404710	0.82[EUR][1000 genomes]
rs1525228	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17170447	1.00[GIH][hapmap];0.91[MEX][hapmap]
rs2140807	0.81[EUR][1000 genomes]
rs28546178	0.82[ASW][hapmap]
rs28582288	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28702601	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4725716	0.84[EUR][1000 genomes]
rs4725734	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs4726862	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs4726863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4726866	1.00[CEU][hapmap]
rs62481227	0.95[EUR][1000 genomes]
rs6464799	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs7779225	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap]
rs7784277	1.00[GIH][hapmap];0.82[MEX][hapmap]
rs7794718	0.83[MEX][hapmap]
rs7805786	0.95[EUR][1000 genomes]
rs7806838	0.84[CEU][hapmap];0.96[YRI][hapmap]
rs826641	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7790550	C7orf33	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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