Variant report

Variant	rs10232106
Chromosome Location	chr7:147107765-147107766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10081334	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10230324	0.88[YRI][hapmap]
rs10231584	1.00[JPT][hapmap]
rs10232280	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10237518	0.88[AMR][1000 genomes]
rs10246974	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10251377	0.80[AMR][1000 genomes]
rs10251521	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10254249	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10261599	0.85[AMR][1000 genomes]
rs10268483	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10276770	1.00[JPT][hapmap]
rs10281923	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs11972997	1.00[JPT][hapmap]
rs11974019	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11979473	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1404709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404710	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406289	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs1479844	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1525217	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1525221	0.85[CHB][hapmap]
rs1525222	1.00[CHB][hapmap]
rs1525228	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17133820	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17170430	1.00[JPT][hapmap]
rs17170447	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17170491	0.80[AMR][1000 genomes]
rs2140807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582288	0.81[EUR][1000 genomes]
rs28702601	0.81[EUR][1000 genomes]
rs4725716	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4725734	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4726862	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4726863	1.00[CEU][hapmap]
rs4726866	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs62481227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6464799	0.85[AMR][1000 genomes]
rs6943018	0.82[AMR][1000 genomes]
rs6945709	1.00[JPT][hapmap]
rs6966749	0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs6968569	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6968578	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7779225	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7784277	1.00[JPT][hapmap]
rs7788649	1.00[JPT][hapmap]
rs7790550	1.00[CEU][hapmap]
rs7792070	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs7805786	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7806838	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs826824	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147098800-147107800	Weak transcription	Osteobl	bone
3	chr7:147104200-147107800	Weak transcription	HSMMtube	muscle
4	chr7:147104200-147108000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:147104200-147108000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:147104200-147108000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:147104200-147108000	Weak transcription	HSMM	muscle
8	chr7:147106200-147108800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:147107600-147108400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:147107600-147108400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:147107600-147110400	Enhancers	NHDF-Ad	bronchial

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