Variant report

Variant	rs6943018
Chromosome Location	chr7:147129824-147129825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10081334	0.86[CHB][hapmap]
rs10232106	0.82[AMR][1000 genomes]
rs10237518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10250570	1.00[JPT][hapmap]
rs10251377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251521	0.83[AMR][1000 genomes]
rs10261599	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10272638	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10281923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11979473	0.86[CHB][hapmap]
rs1404709	0.83[AMR][1000 genomes]
rs1406289	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1525221	0.81[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1525228	0.80[AMR][1000 genomes]
rs17170491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140807	0.83[AMR][1000 genomes]
rs4726862	0.86[CHB][hapmap]
rs4726866	0.86[CHB][hapmap]
rs62481227	0.82[AMR][1000 genomes]
rs6464799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6961003	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6963863	0.81[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6966749	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7777483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7779225	0.86[CHB][hapmap]
rs7792070	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7794718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7805786	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147128400-147130800	Enhancers	Fetal Lung	lung
2	chr7:147129000-147130000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:147129000-147130000	Enhancers	Brain Hippocampus Middle	brain
4	chr7:147129000-147132200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:147129200-147130000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:147129400-147130000	Enhancers	Osteobl	bone
7	chr7:147129600-147130000	Enhancers	Brain Angular Gyrus	brain
8	chr7:147129600-147130000	Enhancers	Brain Substantia Nigra	brain
9	chr7:147129600-147130200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr7:147129800-147130000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr7:147129800-147130000	Enhancers	Gastric	stomach
12	chr7:147129800-147130200	Enhancers	Stomach Mucosa	stomach
13	chr7:147129800-147130800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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