Variant report

Variant	rs10250570
Chromosome Location	chr7:147073363-147073364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10237518	1.00[JPT][hapmap]
rs10251377	1.00[JPT][hapmap]
rs10261599	0.94[ASN][1000 genomes]
rs10272638	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap]
rs10281923	1.00[JPT][hapmap]
rs1406289	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1525221	1.00[JPT][hapmap]
rs1543264	0.96[CEU][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap]
rs17170491	1.00[JPT][hapmap]
rs6464799	1.00[JPT][hapmap]
rs6943018	1.00[JPT][hapmap]
rs6945709	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs6961003	0.94[ASN][1000 genomes]
rs6963863	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs6966749	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7777483	1.00[JPT][hapmap]
rs7792070	1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs7794718	1.00[JPT][hapmap]
rs7805196	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10250570	ATP6V0E2	cis	cerebellum	SCAN
rs10250570	PIP	cis	parietal	SCAN
rs10250570	CUL1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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