Variant report

Variant	rs1406289
Chromosome Location	chr7:147109867-147109868
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10232106	0.85[CHB][hapmap];0.85[AMR][1000 genomes]
rs10237518	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10250570	1.00[JPT][hapmap]
rs10251377	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10261599	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272638	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10281923	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11974019	0.82[CHB][hapmap]
rs1404709	0.85[CHB][hapmap]
rs1404710	0.85[CHB][hapmap]
rs1479844	0.82[CHB][hapmap]
rs1525221	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1525228	0.83[AMR][1000 genomes]
rs17170491	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2140807	0.85[CHB][hapmap]
rs4725716	0.85[CHB][hapmap]
rs62481227	0.85[AMR][1000 genomes]
rs6464799	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943018	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6961003	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963863	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700303	0.80[YRI][hapmap]
rs7777483	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7792070	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7794718	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7805786	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147107600-147110400	Enhancers	NHDF-Ad	bronchial
3	chr7:147107800-147110200	Enhancers	HSMMtube	muscle
4	chr7:147107800-147111400	Enhancers	Osteobl	bone
5	chr7:147108000-147110000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:147108000-147110200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:147108000-147110200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:147108000-147110200	Enhancers	HSMM	muscle
9	chr7:147108000-147111200	Enhancers	Adipose Nuclei	Adipose
10	chr7:147108400-147111000	Enhancers	Fetal Lung	lung
11	chr7:147108800-147111000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr7:147108800-147111200	Enhancers	Fetal Stomach	stomach
13	chr7:147109000-147110200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:147109200-147110200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:147109200-147111000	Enhancers	HMEC	breast
16	chr7:147109200-147111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:147109200-147111400	Enhancers	Fetal Muscle Leg	muscle
18	chr7:147109400-147110200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:147109400-147110800	Enhancers	NH-A	brain
20	chr7:147109600-147110000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:147109600-147110600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr7:147109600-147110800	Weak transcription	Ovary	ovary
23	chr7:147109800-147110000	Flanking Active TSS	NHLF	lung
24	chr7:147109800-147110200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:147109800-147110200	Weak transcription	Placenta	Placenta
26	chr7:147109800-147111200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links