Variant report

Variant	rs11974019
Chromosome Location	chr7:147073576-147073577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10081334	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10231584	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs10232106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10232280	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10232663	1.00[CEU][hapmap]
rs10246974	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10251377	0.82[AMR][1000 genomes]
rs10251521	0.86[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10254249	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs10268483	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10272638	0.82[YRI][hapmap]
rs10276770	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10281923	1.00[JPT][hapmap]
rs11972997	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11979473	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1404709	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1404710	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1406289	0.82[CHB][hapmap]
rs1479844	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs1525217	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1525221	0.82[CHB][hapmap]
rs1525222	1.00[CHB][hapmap]
rs1525228	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1543264	1.00[JPT][hapmap]
rs17133820	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17170430	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17170447	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17170491	0.82[AMR][1000 genomes]
rs2140807	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4725716	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726862	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4726866	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs62481227	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6943018	0.83[AMR][1000 genomes]
rs6945709	1.00[JPT][hapmap]
rs6961003	0.83[AMR][1000 genomes]
rs6963863	0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6966749	0.82[CHB][hapmap];0.81[AMR][1000 genomes]
rs6968569	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968578	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7779225	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7784277	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7788649	1.00[JPT][hapmap]
rs7788941	0.90[CEU][hapmap]
rs7792070	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes]
rs7805196	1.00[JPT][hapmap]
rs7805786	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7806838	1.00[JPT][hapmap]
rs826815	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links