Variant report
| Variant | rs7806838 |
|---|---|
| Chromosome Location | chr7:147151052-147151053 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10081334 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
| rs10231584 | 1.00[JPT][hapmap] |
| rs10232106 | 0.84[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10232280 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10246974 | 0.84[AMR][1000 genomes] |
| rs10251521 | 0.89[AMR][1000 genomes] |
| rs10254249 | 1.00[JPT][hapmap] |
| rs10268483 | 1.00[JPT][hapmap] |
| rs10276770 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10281923 | 1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs11972997 | 1.00[JPT][hapmap] |
| rs11974019 | 1.00[JPT][hapmap] |
| rs11979473 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
| rs1404709 | 1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1404710 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes] |
| rs1406289 | 0.83[AMR][1000 genomes] |
| rs1525217 | 1.00[JPT][hapmap] |
| rs1525222 | 1.00[CHB][hapmap] |
| rs1525228 | 0.93[AMR][1000 genomes] |
| rs17133820 | 1.00[JPT][hapmap] |
| rs17170430 | 1.00[JPT][hapmap] |
| rs17170447 | 1.00[JPT][hapmap] |
| rs2140807 | 1.00[JPT][hapmap];0.89[AMR][1000 genomes] |
| rs4725716 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4725734 | 0.84[CEU][hapmap] |
| rs4726862 | 0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs4726863 | 0.84[CEU][hapmap];0.97[YRI][hapmap] |
| rs4726866 | 0.84[CEU][hapmap];1.00[JPT][hapmap] |
| rs62481227 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6464799 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6943018 | 0.80[AMR][1000 genomes] |
| rs6945709 | 1.00[JPT][hapmap] |
| rs6968569 | 0.80[AMR][1000 genomes] |
| rs6968578 | 0.80[AMR][1000 genomes] |
| rs7779225 | 0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7784277 | 1.00[JPT][hapmap] |
| rs7788649 | 1.00[JPT][hapmap] |
| rs7790550 | 0.84[CEU][hapmap];0.96[YRI][hapmap] |
| rs7792070 | 1.00[JPT][hapmap] |
| rs7805786 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
