Variant report

Variant	rs4725734
Chromosome Location	chr7:147176188-147176189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10081334	0.92[CEU][hapmap]
rs10232106	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10254249	0.91[GIH][hapmap]
rs10268483	0.91[GIH][hapmap]
rs10276770	0.91[GIH][hapmap];0.84[MEX][hapmap]
rs11979473	0.94[ASW][hapmap];0.92[CEU][hapmap];0.91[GIH][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap]
rs17170447	0.91[GIH][hapmap];0.84[MEX][hapmap]
rs28582288	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28702601	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4726862	0.92[CEU][hapmap]
rs4726863	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4726866	1.00[CEU][hapmap]
rs7779225	0.92[CEU][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap]
rs7784277	0.91[GIH][hapmap]
rs7790550	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs7806838	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4725734	LRRC61	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147175800-147176200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:147175800-147176200	Enhancers	Gastric	stomach
3	chr7:147176000-147176200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:147176000-147176400	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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