Variant report

Variant	rs10268483
Chromosome Location	chr7:147061654-147061655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147045457..147047946-chr7:147059907..147061995,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10081334	1.00[JPT][hapmap]
rs10230324	0.92[LWK][hapmap];1.00[YRI][hapmap]
rs10231584	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10232106	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10232280	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10232663	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs10246974	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251521	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10254249	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs10276770	0.90[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs10281923	1.00[JPT][hapmap]
rs11972997	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11974019	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11979473	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1404709	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404710	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1479844	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[YRI][hapmap]
rs1525217	0.90[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1525222	1.00[CHB][hapmap]
rs1525228	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17133820	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs17170430	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17170447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap]
rs2140807	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4725716	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4725734	0.91[GIH][hapmap]
rs4726862	1.00[JPT][hapmap]
rs4726866	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs62481227	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6945709	1.00[JPT][hapmap]
rs6966749	0.80[AMR][1000 genomes]
rs6968569	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968578	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779225	1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs7784277	0.90[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs7788649	1.00[JPT][hapmap]
rs7788941	0.81[CEU][hapmap]
rs7790550	1.00[GIH][hapmap]
rs7792070	1.00[JPT][hapmap]
rs7806838	1.00[JPT][hapmap]
rs826824	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10268483	HDAC10	trans	parietal	SCAN
rs10268483	OR6W1P	cis	parietal	SCAN
rs10268483	LRRC61	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147059600-147062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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