Variant report
| Variant | rs10232663 |
|---|---|
| Chromosome Location | chr7:147041810-147041811 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10231584 | 0.90[CEU][hapmap];1.00[CHB][hapmap] |
| rs10232106 | 0.87[ASN][1000 genomes] |
| rs10232280 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10246974 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10251521 | 0.86[CEU][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10254249 | 0.89[CEU][hapmap];1.00[CHB][hapmap] |
| rs10268483 | 0.90[CEU][hapmap];0.85[CHB][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10276770 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs10281236 | 0.84[YRI][hapmap] |
| rs11972997 | 0.85[CEU][hapmap] |
| rs11974019 | 1.00[CEU][hapmap] |
| rs1404709 | 0.90[CEU][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1404710 | 0.90[CEU][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1479844 | 0.90[CEU][hapmap] |
| rs1525217 | 1.00[CEU][hapmap] |
| rs1525228 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17133820 | 1.00[CEU][hapmap] |
| rs17170430 | 0.90[CEU][hapmap] |
| rs17170447 | 0.90[CEU][hapmap];0.85[CHB][hapmap] |
| rs2140807 | 0.89[CEU][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4725716 | 0.82[CEU][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4726862 | 1.00[JPT][hapmap] |
| rs6968569 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6968578 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7784277 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7788941 | 0.90[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933033 | chr7:146720301-147081560 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033898 | chr7:146721499-147081768 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv1033398 | chr7:146989035-147101573 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv465192 | chr7:147001077-147086045 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv608943 | chr7:147001077-147086045 | Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
| 7 | nsv526693 | chr7:147011388-147054250 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | nsv1018715 | chr7:147012067-147052280 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
