Variant report

Variant	rs17133820
Chromosome Location	chr7:147042960-147042961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147018041..147019987-chr7:147042337..147044392,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10081334	1.00[JPT][hapmap]
rs10230324	0.88[YRI][hapmap]
rs10231584	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10232106	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10232280	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10232663	1.00[CEU][hapmap]
rs10246974	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10251521	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10254249	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10268483	0.90[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10276770	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10281923	1.00[JPT][hapmap]
rs11972997	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs11974019	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11979473	1.00[JPT][hapmap]
rs1404709	0.90[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1404710	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1479844	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs1525217	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1525228	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17170430	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17170447	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs2140807	0.89[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4725716	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4726862	1.00[JPT][hapmap]
rs4726866	1.00[JPT][hapmap];0.95[YRI][hapmap]
rs62481227	0.89[AMR][1000 genomes]
rs6945709	1.00[JPT][hapmap]
rs6968569	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6968578	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7779225	1.00[JPT][hapmap]
rs7784277	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7788649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7788941	0.90[CEU][hapmap]
rs7792070	1.00[JPT][hapmap]
rs7806838	1.00[JPT][hapmap]
rs826824	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv526693	chr7:147011388-147054250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1018715	chr7:147012067-147052280	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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