Variant report

Variant	rs10081334
Chromosome Location	chr7:147140812-147140813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10231584	1.00[JPT][hapmap]
rs10232106	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10232280	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10237518	0.86[CHB][hapmap]
rs10246974	0.84[AMR][1000 genomes]
rs10251377	0.86[CHB][hapmap]
rs10251521	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10254249	1.00[JPT][hapmap]
rs10268483	1.00[JPT][hapmap]
rs10276770	1.00[JPT][hapmap]
rs10281923	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs11972997	1.00[JPT][hapmap]
rs11974019	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11979473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1404709	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1404710	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1406289	0.83[AMR][1000 genomes]
rs1479844	0.82[CHB][hapmap]
rs1525217	1.00[JPT][hapmap]
rs1525228	0.93[AMR][1000 genomes]
rs17133820	1.00[JPT][hapmap]
rs17170430	1.00[JPT][hapmap]
rs17170447	1.00[JPT][hapmap]
rs17170491	0.86[CHB][hapmap]
rs2140807	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs28582288	0.80[EUR][1000 genomes]
rs28702601	0.80[EUR][1000 genomes]
rs4725716	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4725734	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4726862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726863	0.92[CEU][hapmap]
rs4726866	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62481227	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6464799	0.86[CHB][hapmap];0.83[AMR][1000 genomes]
rs6943018	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs6945709	1.00[JPT][hapmap]
rs6961003	0.83[AMR][1000 genomes]
rs6963863	0.81[AMR][1000 genomes]
rs6966749	0.81[AMR][1000 genomes]
rs6968569	0.80[AMR][1000 genomes]
rs6968578	0.80[AMR][1000 genomes]
rs7777483	0.86[CHB][hapmap]
rs7779225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7784277	1.00[JPT][hapmap]
rs7788649	1.00[JPT][hapmap]
rs7790550	0.92[CEU][hapmap]
rs7792070	1.00[JPT][hapmap]
rs7794718	0.86[CHB][hapmap]
rs7805786	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806838	0.92[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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