Variant report

Variant	rs6966749
Chromosome Location	chr7:147101573-147101574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10232106	0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs10232280	0.82[AMR][1000 genomes]
rs10237518	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10246974	0.86[AMR][1000 genomes]
rs10250570	1.00[JPT][hapmap]
rs10251377	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10251521	0.81[AMR][1000 genomes]
rs10261599	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268483	0.80[AMR][1000 genomes]
rs10272638	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10281923	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11974019	0.82[CHB][hapmap]
rs1404709	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs1404710	0.85[CHB][hapmap];0.89[AMR][1000 genomes]
rs1406289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1479844	0.82[CHB][hapmap]
rs1525221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1525228	0.84[AMR][1000 genomes]
rs17170491	0.86[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2140807	0.85[CHB][hapmap];0.81[AMR][1000 genomes]
rs4725716	0.85[CHB][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62481227	0.82[AMR][1000 genomes]
rs6464799	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6943018	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6961003	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963863	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6968569	0.82[AMR][1000 genomes]
rs6968578	0.82[AMR][1000 genomes]
rs7777483	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7792070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7794718	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147097800-147107600	Weak transcription	NHDF-Ad	bronchial
3	chr7:147098400-147103600	Weak transcription	HSMMtube	muscle
4	chr7:147098600-147103200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:147098800-147103200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:147098800-147103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:147098800-147107800	Weak transcription	Osteobl	bone
8	chr7:147099000-147103200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:147101400-147102000	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links