Variant report

Variant	rs10261599
Chromosome Location	chr7:147111303-147111304
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10232106	0.85[AMR][1000 genomes]
rs10237518	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10251377	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10281923	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1406289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17170491	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62481227	0.85[AMR][1000 genomes]
rs6464799	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943018	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6961003	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963863	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966749	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792070	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7794718	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7805786	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147095400-147120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147107800-147111400	Enhancers	Osteobl	bone
3	chr7:147109200-147111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:147109200-147111400	Enhancers	Fetal Muscle Leg	muscle
5	chr7:147110200-147111400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:147110200-147111400	Enhancers	Placenta	Placenta
7	chr7:147110600-147111400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:147110600-147111400	Enhancers	HSMM	muscle
9	chr7:147110600-147111400	Enhancers	NHDF-Ad	bronchial
10	chr7:147110600-147111600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:147110600-147111600	Enhancers	Fetal Muscle Trunk	muscle
12	chr7:147110800-147111600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:147111000-147111400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:147111000-147111400	Enhancers	NHLF	lung
15	chr7:147111000-147113200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:147111200-147111400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:147111200-147111600	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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