Variant report

Variant	rs10281923
Chromosome Location	chr7:147124626-147124627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10081334	1.00[JPT][hapmap]
rs10231584	1.00[JPT][hapmap]
rs10232106	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs10237518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250570	1.00[JPT][hapmap]
rs10251377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10254249	1.00[JPT][hapmap]
rs10261599	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10268483	1.00[JPT][hapmap]
rs10272638	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs10276770	1.00[JPT][hapmap]
rs11972997	1.00[JPT][hapmap]
rs11974019	1.00[JPT][hapmap]
rs11979473	1.00[JPT][hapmap]
rs1404709	1.00[JPT][hapmap]
rs1404710	1.00[JPT][hapmap]
rs1406289	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1525217	1.00[JPT][hapmap]
rs1525221	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs1525228	0.83[AMR][1000 genomes]
rs1543264	1.00[JPT][hapmap]
rs17133820	1.00[JPT][hapmap]
rs17170430	1.00[JPT][hapmap]
rs17170447	1.00[JPT][hapmap]
rs17170491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2140807	1.00[JPT][hapmap]
rs4725716	1.00[JPT][hapmap]
rs4726862	1.00[JPT][hapmap]
rs4726866	1.00[JPT][hapmap]
rs62481227	0.85[AMR][1000 genomes]
rs6464799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945709	1.00[JPT][hapmap]
rs6961003	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6963863	0.84[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6966749	0.84[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7777483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7779225	1.00[JPT][hapmap]
rs7784277	1.00[JPT][hapmap]
rs7788649	1.00[JPT][hapmap]
rs7792070	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7794718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805196	1.00[JPT][hapmap]
rs7805786	0.85[AMR][1000 genomes]
rs7806838	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147123200-147128200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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