Variant report

Variant	rs700303
Chromosome Location	chr7:147086045-147086046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10242076	0.85[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs10281236	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs12703912	0.83[JPT][hapmap]
rs1351312	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1406289	0.80[YRI][hapmap]
rs2022226	0.82[ASW][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap]
rs2620485	0.84[JPT][hapmap]
rs826808	1.00[CEU][hapmap];0.80[CHB][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs826810	0.90[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap]
rs826815	0.83[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs826821	0.84[JPT][hapmap]
rs826822	0.82[CHD][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs826824	0.81[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap]
rs826825	1.00[CEU][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs826827	0.81[JPT][hapmap]
rs826829	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs861160	0.88[JPT][hapmap]
rs9640243	0.84[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
3	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
4	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links