Variant report

Variant	rs2620485
Chromosome Location	chr7:147048137-147048138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10281236	0.83[JPT][hapmap]
rs10500179	0.92[YRI][hapmap]
rs1358540	0.89[JPT][hapmap]
rs1479846	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1525220	0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1528515	0.88[JPT][hapmap]
rs17497557	0.89[YRI][hapmap]
rs2178212	0.89[JPT][hapmap]
rs2620484	0.89[JPT][hapmap]
rs4726860	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4726861	0.88[JPT][hapmap]
rs6464803	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs6464804	0.89[JPT][hapmap]
rs6464805	0.83[JPT][hapmap]
rs6944237	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs6972045	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs700294	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs700295	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs700303	0.84[JPT][hapmap]
rs700304	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs700305	0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs700309	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs7781124	0.94[JPT][hapmap]
rs7798078	0.92[YRI][hapmap]
rs7807007	0.89[JPT][hapmap]
rs826643	0.87[JPT][hapmap]
rs826644	0.85[JPT][hapmap]
rs826654	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826794	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs826795	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs826796	0.93[JPT][hapmap]
rs826798	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs826799	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs826801	0.85[ASN][1000 genomes]
rs826808	0.83[JPT][hapmap]
rs826809	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs826810	0.83[JPT][hapmap]
rs826811	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs826815	0.83[JPT][hapmap]
rs826816	0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs826819	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826820	0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs826821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826822	0.83[JPT][hapmap]
rs826824	0.83[JPT][hapmap]
rs826825	0.89[JPT][hapmap]
rs826827	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs826828	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826829	0.89[JPT][hapmap]
rs826831	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs861160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv526693	chr7:147011388-147054250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1018715	chr7:147012067-147052280	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3332464	chr7:147044819-147049817	Inactive region	Chromatin interactive region	n/a	n/a	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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