Variant report

Variant	rs700309
Chromosome Location	chr7:147093040-147093041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10242076	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs10270551	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs10276608	0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap]
rs10281236	0.89[JPT][hapmap]
rs10500175	1.00[YRI][hapmap]
rs10952682	0.81[CHD][hapmap];0.86[GIH][hapmap];0.93[MEX][hapmap]
rs10952685	0.81[CHD][hapmap];0.87[GIH][hapmap];0.93[MEX][hapmap]
rs11972784	0.90[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs12703912	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12703913	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs13234094	1.00[YRI][hapmap]
rs1358540	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1406284	0.88[ASW][hapmap]
rs1406285	1.00[YRI][hapmap]
rs1468370	1.00[YRI][hapmap]
rs1479846	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1525220	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1528515	0.82[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1528522	1.00[YRI][hapmap]
rs1830343	0.88[ASW][hapmap]
rs2022225	0.83[CHD][hapmap];0.91[GIH][hapmap]
rs2178212	0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2222598	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs2373133	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs2620484	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2620485	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs2692136	0.89[ASW][hapmap]
rs2888503	0.84[CHB][hapmap];1.00[YRI][hapmap]
rs3915305	0.87[ASW][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap]
rs4725726	1.00[YRI][hapmap]
rs4725731	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs4725732	1.00[YRI][hapmap]
rs4725735	1.00[YRI][hapmap]
rs4725737	1.00[YRI][hapmap]
rs4726860	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4726861	0.89[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs4726864	1.00[YRI][hapmap]
rs4726870	0.80[CHD][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap]
rs4726872	1.00[YRI][hapmap]
rs6464803	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6464804	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6464805	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs6464809	1.00[YRI][hapmap]
rs6464810	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs6944237	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6947428	0.88[ASW][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap]
rs6972045	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs700294	0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs700295	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs700304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700305	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7781124	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7783425	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs7783548	0.88[ASW][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap]
rs7789396	0.81[CHD][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap]
rs7807007	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs826643	0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826644	0.92[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826791	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs826794	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs826795	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs826796	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs826798	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826799	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs826801	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs826809	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs826810	0.82[CHD][hapmap];0.89[JPT][hapmap]
rs826811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap]
rs826815	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs826816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs826819	0.89[ASN][1000 genomes]
rs826820	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs826821	0.84[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs826822	0.89[JPT][hapmap]
rs826824	0.82[CHD][hapmap];0.89[JPT][hapmap]
rs826825	0.84[JPT][hapmap]
rs826827	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826828	0.90[ASN][1000 genomes]
rs826829	0.84[JPT][hapmap]
rs826831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs861160	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs9640243	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs700309	CUL1	cis	cerebellum	SCAN
rs700309	OR2F2	cis	cerebellum	SCAN
rs700309	FAM115A	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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