Variant report

Variant	rs1406284
Chromosome Location	chr7:147184567-147184568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1018993	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1018994	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1018996	0.89[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251234	0.89[CEU][hapmap]
rs10260316	0.89[CEU][hapmap]
rs10260458	0.89[CEU][hapmap]
rs10270551	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs10276608	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10282026	0.89[CEU][hapmap]
rs10282126	0.89[CEU][hapmap]
rs10952681	0.89[CEU][hapmap]
rs10952682	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs10952683	0.89[CEU][hapmap]
rs10952684	0.89[CEU][hapmap]
rs10952685	0.89[CEU][hapmap];0.91[TSI][hapmap]
rs11972784	0.84[CEU][hapmap];0.81[GIH][hapmap]
rs12540164	0.89[CEU][hapmap]
rs12703913	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs12703914	0.89[CEU][hapmap]
rs1406285	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1468370	0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528515	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs1528522	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528527	0.89[CEU][hapmap]
rs1528528	0.89[CEU][hapmap]
rs1528531	0.89[CEU][hapmap]
rs1830343	1.00[ASW][hapmap]
rs2021879	0.87[CEU][hapmap]
rs2021880	0.89[CEU][hapmap]
rs2022225	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs2178212	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2373132	0.88[CEU][hapmap]
rs2373133	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs2373138	0.89[CEU][hapmap]
rs2373139	0.89[CEU][hapmap]
rs2620484	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs2888503	0.89[CEU][hapmap]
rs2888504	0.89[CEU][hapmap]
rs3915305	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[GIH][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap]
rs4259337	0.89[CEU][hapmap]
rs4725723	0.89[CEU][hapmap]
rs4725725	0.83[CEU][hapmap]
rs4725726	0.89[CEU][hapmap]
rs4725731	0.89[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap]
rs4725732	0.88[CEU][hapmap]
rs4725735	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4725737	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726860	0.84[CEU][hapmap]
rs4726861	0.84[CEU][hapmap];0.82[GIH][hapmap];0.81[TSI][hapmap]
rs4726864	0.89[CEU][hapmap]
rs4726870	0.84[CEU][hapmap];0.91[GIH][hapmap];0.94[TSI][hapmap]
rs4726871	0.88[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4726872	0.89[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4726874	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6464803	0.84[CEU][hapmap]
rs6464804	0.84[CEU][hapmap]
rs6464809	0.89[CEU][hapmap]
rs6464810	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs6464811	0.89[CEU][hapmap]
rs6464812	0.89[CEU][hapmap]
rs6464813	0.89[CEU][hapmap]
rs6947428	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[GIH][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap]
rs6972045	0.84[CEU][hapmap]
rs700305	0.89[ASW][hapmap]
rs700309	0.88[ASW][hapmap]
rs7781124	0.84[CEU][hapmap]
rs7782093	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7783425	0.89[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs7783548	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[GIH][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap]
rs7789396	0.84[CEU][hapmap];0.82[GIH][hapmap];0.91[TSI][hapmap]
rs7794824	0.89[CEU][hapmap]
rs7796036	0.89[CEU][hapmap]
rs7805836	0.89[CEU][hapmap]
rs7807007	0.84[CEU][hapmap]
rs7810880	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826643	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs826644	0.83[EUR][1000 genomes]
rs917125	0.89[CEU][hapmap]
rs917126	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1406284	CUL1	cis	cerebellum	SCAN
rs1406284	GIMAP1	cis	cerebellum	SCAN
rs1406284	FAM115A	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147183200-147188600	Weak transcription	Muscle Satellite Cultured Cells	--

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