Variant report

Variant	rs2620484
Chromosome Location	chr7:147125515-147125516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1018993	0.83[EUR][1000 genomes]
rs1018994	0.81[EUR][1000 genomes]
rs1018996	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs10242076	0.89[JPT][hapmap]
rs10251234	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs10260316	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs10260458	0.94[CEU][hapmap];0.83[CHB][hapmap]
rs10270551	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs10276608	0.94[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs10281236	0.83[JPT][hapmap]
rs10282026	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs10282126	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs10952681	0.95[CEU][hapmap];0.84[CHB][hapmap]
rs10952682	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs10952683	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs10952684	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs10952685	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs11972784	1.00[CEU][hapmap]
rs12540164	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs12703912	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12703913	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs12703914	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs1358540	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1406284	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1406285	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1468370	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs1479846	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1525220	0.84[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs1528515	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1528522	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1528527	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs1528528	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs1528531	0.95[CEU][hapmap];0.84[CHB][hapmap]
rs2021879	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs2021880	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs2022225	0.94[CEU][hapmap]
rs2178212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2222598	1.00[YRI][hapmap]
rs2373132	0.94[CEU][hapmap];0.83[CHB][hapmap]
rs2373133	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs2373138	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs2373139	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs2620485	0.89[JPT][hapmap]
rs2888503	0.95[CEU][hapmap];0.89[CHB][hapmap]
rs2888504	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs3915305	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs4259337	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs4725723	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs4725725	0.90[CEU][hapmap]
rs4725726	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs4725731	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs4725732	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs4725735	0.95[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4725737	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4726860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726861	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4726864	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs4726870	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs4726871	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs4726872	0.95[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4726874	0.82[EUR][1000 genomes]
rs6464803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6464804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6464805	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs6464809	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs6464810	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs6464811	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs6464812	0.95[CEU][hapmap];0.84[CHB][hapmap]
rs6464813	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs6944237	0.95[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs6947428	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs6972045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs700294	0.81[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs700295	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs700304	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs700305	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs700309	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7781124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7782093	0.95[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs7783425	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs7783548	0.94[CEU][hapmap];0.84[CHB][hapmap]
rs7789396	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs7794824	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs7796036	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs7805836	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs7807007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7810880	0.83[EUR][1000 genomes]
rs826643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs826654	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs826794	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826795	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826796	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs826798	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826799	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826809	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs826810	0.83[JPT][hapmap]
rs826811	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs826815	0.83[JPT][hapmap]
rs826816	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs826820	0.84[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes]
rs826821	0.88[JPT][hapmap]
rs826822	0.83[JPT][hapmap]
rs826824	0.83[JPT][hapmap]
rs826827	0.93[JPT][hapmap]
rs826831	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs861160	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs917125	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs917126	0.95[CEU][hapmap];0.85[CHB][hapmap]
rs9640243	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv608954	chr7:147104887-147145576	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv1024540	chr7:147105149-147138125	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147123200-147128200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links