Variant report

Variant	rs2222598
Chromosome Location	chr7:147024027-147024028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10500175	1.00[YRI][hapmap]
rs13234094	1.00[YRI][hapmap]
rs1406285	1.00[YRI][hapmap]
rs1468370	1.00[YRI][hapmap]
rs1479846	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1525220	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1528515	1.00[YRI][hapmap]
rs1528522	1.00[YRI][hapmap]
rs2178212	1.00[YRI][hapmap]
rs2620484	1.00[YRI][hapmap]
rs2888503	1.00[YRI][hapmap]
rs3915305	1.00[YRI][hapmap]
rs4725726	1.00[YRI][hapmap]
rs4725732	1.00[YRI][hapmap]
rs4725735	1.00[YRI][hapmap]
rs4725737	1.00[YRI][hapmap]
rs4726864	1.00[YRI][hapmap]
rs4726872	1.00[YRI][hapmap]
rs6464803	1.00[YRI][hapmap]
rs6464809	1.00[YRI][hapmap]
rs6947428	1.00[YRI][hapmap]
rs700294	1.00[CEU][hapmap]
rs700295	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs700304	0.94[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs700305	0.94[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs700309	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs7783548	1.00[YRI][hapmap]
rs7807007	1.00[YRI][hapmap]
rs826644	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs826654	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs826791	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs826794	1.00[CEU][hapmap]
rs826795	1.00[CEU][hapmap]
rs826796	1.00[CEU][hapmap]
rs826798	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs826799	1.00[CEU][hapmap]
rs826801	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826811	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs826816	0.95[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826819	0.81[ASN][1000 genomes]
rs826820	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs826821	0.81[ASN][1000 genomes]
rs826827	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs826828	0.80[ASN][1000 genomes]
rs826831	0.95[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889396	chr7:146854133-147035067	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
8	nsv526693	chr7:147011388-147054250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1018715	chr7:147012067-147052280	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv608953	chr7:147021553-147040881	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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